barSeed - Barley Seed Development Database

Probe CUST_288_PI390587928

Source Contig U35_32031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_288_PI390587928	Hv_44K_v2	TTCGGGTGGTCGTCCAGGGTGACAAGGCGAGGTTCCAGGCCCTGTACCTGGGCACCCGCG	247	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356380	2072	2e-24	905 - 964	100	60 / 60	plus	ABC12286
MLOC	MLOC_33192.1	1401	2e-24	531 - 590	100	60 / 60	plus	ABC12286
JLOC1	JLOC1_21536.1	1655	8e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_32031	367	3e-25	248 - 307	100	60 / 60	plus

Contig Sequence (367 bp)

>U35_32031 367 Hv_44K_v2
AACGCCGTGATGGTCGACGCCGAGGGACGGCTCCTGGACAAGCAGGCAATGGGGCGCGAC
GTCTTCTGGGCCATCCGGGGCGGCGGCGGCGGGAGCTTCGGCATCGTGCTGTCGGGGAAG
GTGAGGCTCGTGGCCGTGCCGTCGAGGGTCACGGTGTTCACCGTCGTCAAGTCGGCCCAG
CAGGGCGCCGCGGACGTGCTCGCCAAGTGGCAAGAGGTGGCCCCTGCTCTCCCCGACGAC
CTGCTGGTTCGGGTGGTCGTCCAGGGTGACAAGGCGAGGTTCCAGGCCCTGTACCTGGGC
ACCCGCGACGCGCTCCTGCCGGTGATGGGCAGCCGCTTCCCGGAGCTCGGCGTCAACCCG
GCGCACT

Homology of Contig U35_32031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None