barSeed - Barley Seed Development Database

Probe CUST_2887_PI390587928

Source Contig U35_30629

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2887_PI390587928	Hv_44K_v2	CACATTGGGTCGAATTCGGAACCTCACCAACTGCTAGAATTTATACAATTCCAGTTAGCA	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363488	2082	2e-24	1882 - 1941	100	60 / 60	plus	None
MLOC	MLOC_65175.1	1520	2e-24	1172 - 1231	100	60 / 60	plus	ABC28493
JLOC1	JLOC1_42871.1	1369	8e-25	1176 - 1235	100	60 / 60	plus
Harvest21	ABC30630	467	3e-25	408 - 467	100	60 / 60	plus
Harvest35	U35_30629	467	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_30629 467 Hv_44K_v2
CTGGAGGAGATGGAGCAGATGGGGCTGTTCAAGTACGGCGGCCTGCCGCACTGGGGCAAG
AACCGCAACCTCGCCTTCGCCGGCGTGGCCAGCAAGTACCCCGGGATGCGCCGGTTCCTG
CGCGTCTAGAACGCCTACGACCCCGACGGCCTCTTCTCCAGCGGCTGGAGCGACATGATG
CTCGGCGTCGGCGGCGCGCCGACGAGGGACGCGCCAGGGTGCGCGCTGGAAGGGATGTGC
GTGTGCTCGCGGGACGCGCACTGCGCGCCGGAGCAGGGCTACGTGTGCCGGCCCGGCAAG
GTGTACAAGGATGCCAGGGTCTGCACCAAAGTGTAGTCGTCTCGTCTCGTCTCGTCTCGT
CCATCTGAATTACAGGAAGAACGGTAGGATGGGCTTGACACAAACCACACATTGGGTCGA
ATTCGGAACCTCACCAACTGCTAGAATTTATACAATTCCAGTTAGCA

Homology of Contig U35_30629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g36530.1	605	1e-63	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None