barSeed - Barley Seed Development Database

Probe CUST_28871_PI390587928

Source Contig U35_29037

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28871_PI390587928	Hv_44K_v2	AGCAGATCAAATAATAGAAGCAGGATTGACAAGGAGCCTCCAGTCAATAGAGGCAGGCAA	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366111	2554	2e-24	974 - 1033	100	60 / 60	plus	ABC07698 ABC07699 ABC38666
MLOC	MLOC_49267.1	895	7e-23	251 - 310	98	59 / 60	minus	ABC07698
MLOC	MLOC_49267.2	172	7e-23	76 - 135	98	59 / 60	minus	ABC07698
JLOC1	JLOC1_31547.1	679	4e-23	240 - 299	98	59 / 60	minus
Harvest21	ABC28193	716	3e-25	656 - 715	100	60 / 60	plus
Harvest21	ABC07698	1677	3e-25	32 - 91	100	60 / 60	plus	ABC07698
Harvest35	U35_29037	716	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_29037 716 Hv_44K_v2
GATTCGAAGAAATTCCCATTTGTAGGTGATTGGCAAAGCCCTCGAGAAGCCCCGCGAGCG
CCTCTCAGTGCTACGGATGGAGCAAGACATTCTCAAGTTCCTCCGTGAACCTGGGCAGAC
GCAGTTCGAGTTCCAGGGCCTTCGGACTTCGTACCTACGTCTTGCTGCGCACCGTCTGGC
ACAACATTATTACCTAATATCGATCGCCCTGTCGGATAACAGCTTGCTTGATGGGACCAG
TTCTCGGATCATCCTTCGTAAGACGTCTGCTGAATGCCGATTGCCCGCTGTCCGCCTAGC
TGACATTCCAGTTAATTTGCCTCAAGAAGAGACCAGCGTTGTGGCCACCAAAGTAGCTAT
TAAGCAAAGGCCTCAGAAGAATCACCACGGGGGCGCAGGCGCAGGTGCTAACTCTTCCAG
AGGCAACCTTCAGAAAAGCGTTGAGGAGAGGAAAGAGGAATACAACAGGGCACGTGCTCG
CATATTTAACAACAGCAGTGGTAGCAGTAGTCCGGTTGATGGAAGACCAGCTGATGAAGT
TGTTTTGCCCAACACCCTACATAGGTCCACTTCCTTGGAGTTGAACCCAAACACCAGGTA
CGGTGAATTGGCTGAAGCTACCCTTGAAAGGAGTTTGACTAGCACTGCATCTAGCAGCAG
ATCAAATAATAGAAGCAGGATTGACAAGGAGCCTCCAGTCAATAGAGGCAGGCAAG

Homology of Contig U35_29037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39462.3	318	5e-91	protein\|nucleic acid binding protein, putative, expressed
Brachypodium v1_2	Bradi4g38500.1	465	2e-105
Arabidopsis v10	None