- Probe CUST_28837_PI390587928
- Source Contig U35_29049
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28837_PI390587928 | Hv_44K_v2 | GGGAAGGACCTTATCCAGAACCATCTGACATTCAGCATCTACAATCATACAGCACTTCTT | 608 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356763 | 3864 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | plus | ABC06948 ABC06949 ABC06950 ABC40620 |
| MLOC | MLOC_68654.1 | 2194 | 2e-24 | 514 - 573 | 100 | 60 / 60 | plus | ABC06948 ABC06949 ABC06950 ABC40620 |
| MLOC | AK363274 | 3768 | 3e-21 | 2120 - 2176 | 98 | 56 / 57 | plus | ABC06948 ABC06949 ABC06950 |
| MLOC | AK362746 | 3948 | 3e-21 | 2195 - 2251 | 98 | 56 / 57 | plus | ABC06948 ABC06949 ABC06950 |
| MLOC | MLOC_66670.1 | 2206 | 3e-21 | 1635 - 1691 | 98 | 56 / 57 | minus | ABC06948 ABC06949 ABC06950 |
| MLOC | MLOC_66670.2 | 2242 | 3e-21 | 1671 - 1727 | 98 | 56 / 57 | minus | ABC06948 ABC06949 ABC06950 |
| JLOC1 | JLOC1_45436.1 | 2326 | 8e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43964.2 | 2422 | 2e-21 | 517 - 573 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_43964.1 | 2457 | 2e-21 | 516 - 572 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC28206 | 684 | 3e-25 | 609 - 668 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09546 | 1235 | 6e-22 | 637 - 693 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_29049 | 684 | 3e-25 | 609 - 668 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18813 | 1760 | 6e-22 | 1162 - 1218 | 98 | 56 / 57 | plus |
Contig Sequence (684 bp)
>U35_29049 684 Hv_44K_v2 GGCTTAAAGGATTTACAGATGGAGTGATGATTGCAGGGGAGTTTGATGGTAGAAAGGTTC AAGAAGCGAAGCCACTGATAAAGAACAAGCTTCTTGGAGAAGGCTCTGCTGTGTTGTATA GCGAGCCTGAGAAGAAAGTCATGTCAAGATCCGGAGACGAGTGTGTCGTTGCTCTTACAG ATCAGTGGTACATAACTTATGGTGAAACTGAATGGAAGCAGAAGGCAGTCAAATGTTTGG AAAATATGAATACATTCTCAGCTGAAACCCGTAACGGATTTGAACACACGTTGGGCTGGT TGAACCAGTGGGCATGTTCACGCTCTTTTGGCCTAGGTACTCGCATTCCATGGGACGAGC AGTTCTTGGTAGAATCCCTTTCAGATTCAACCCTGTACATGGCGTATTACACCATTGCAC ATCATCTACAAAATGGTAACATGTATGGAGAAGAAATATCTTCTATCAAGCCTGAAGAAA TGACAGATGAAGTATGGGAATATGTGTTCTGTGATGGTCCAGCACCCAATAGCAACATCC CTCCTGTCCTCTTGAGTAAAATGAAGCAAGAGTTTAAGTATTGGTACCCCTTTGATATTC GGGTATCTGGGAAGGACCTTATCCAGAACCATCTGACATTCAGCATCTACAATCATACAG CACTTCTTCCAGAGCATCATTGGC
Homology of Contig U35_29049 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g32650.1 | 1096 | 1e-150 | protein|leucyl-tRNA synthetase, cytoplasmic, putative, expressed |
| Brachypodium v1_2 | Bradi2g08390.1 | 1097 | 2e-152 | |
| Arabidopsis v10 | AT1G09620.1 | 1091 | 1e-116 | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091 |