barSeed - Barley Seed Development Database

Probe CUST_28822_PI390587928

Source Contig U35_17075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28822_PI390587928	Hv_44K_v2	GATCTTGTAGATCTCGTCAAATTTGAACTATCCCGTTGCTGTTTCTGAATGCTTAAAAAA	840	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374714	978	3e-22	909 - 964	100	56 / 56	plus	ABC06780 ABC06781
MLOC	MLOC_1064.1	1040	3e-22	883 - 938	100	56 / 56	plus	ABC06780 ABC06781
JLOC1	JLOC1_657.1	845	1e-22	712 - 767	100	56 / 56	plus
Harvest35	U35_17075	911	3e-25	841 - 900	100	60 / 60	plus

Contig Sequence (911 bp)

>U35_17075 911 Hv_44K_v2
CTAGTGGATCCAAAGCCCGGACGAGCCGGGCGACGCGCGCGTGGTGCGGGAGCTCCTCCG
GTCGATGGGGCTCGGCGAGGGCGAGTACGAGCCGCGCGTCGTGGGCCAGTTCCTGGACCT
GGCATACCGGTACGTCGGGGACGTGCTCGGCGACGCCCAGGTCTACGCCGACCACGCAGA
CAAGCCCCAGATCGACGCCGACGACGTCCGCCTCGCCATCCAGGCCAATGTCAACTTCTC
CTTCTCCCAGCCGCCGCCCCGCGAGGTTTTACTCGAGTTGGCACGCAGCCGGAACAAGAT
CCCGTTGCCCAAGTCTATTGCTCCACCTGGCTCGATTCCTTTGCCACCCGAGCAGGACAC
TTTGTTGAGTGAAAACTACCAGCTCCTACCCGCACTGAAGCCGCCAACTCAGACTGAAGA
AGCAGAGGATGACAATGAGGGAGCCGACGCAATCCCTGCCAATCCTAGTCCAAGCTATTC
GCAGGATCAGAGGGGCAGTGAGCAACATCAGCCTCAGAGCCAGAGCCAGAGGGTTTCTTT
CCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGCGCCCTCTGGTGACAACTGACCAGTT
GAACATGGGCTAACTGATTGTAGATCGCTGGCAGGTTCCTGGTGCTTGCTCCCGCAAGCC
TACTTGCTGATGCTTGTGTAGCTTCTGGGATCGCCCTTTCTGGCTTCCGCCCTCCTATGT
CACCATGAAAAATTGCTGATTGTTGAGGAAAGGGAGCAGCCGTGCAAGTAGTGTACTAGT
ATGCTGTAGCCGTGTACCTTGGGTTAATTAATTCATTCCTGTCCGTTATTTTAACTTATT
GATCTTGTAGATCTCGTCAAATTTGAACTATCCCGTTGCTGTTTCTGAATGCTTAAAAAA
AAAAAAGAAAA

Homology of Contig U35_17075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g29470.1	225	1e-85	protein\|transcription initiation factor IID, putative, expressed
Brachypodium v1_2	Bradi4g28410.1	225	2e-97
Arabidopsis v10	AT1G54140.1	183	5e-56	\| Symbols: TAFII21, TAF9 \| TATA binding protein associated factor 21kDa subunit \| chr1:20214076-20214869 REVERSE LENGTH=183