barSeed - Barley Seed Development Database

Probe CUST_2878_PI390587928

Source Contig U35_494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2878_PI390587928	Hv_44K_v2	TGCCTATAGCTCCAGCTATCGATCCTGAGACGCTGAGTACGTTGAGGTTATTTACACAAC	447	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250392.1	734	7e-23	460 - 519	98	59 / 60	plus	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC34970 ABC49923 ABC50827 ABC53018
MLOC	MLOC_79050.1	1147	7e-23	127 - 186	98	59 / 60	minus	ABC00717 ABC00824 ABC00871 ABC00959 ABC00972 ABC53018
MLOC	MLOC_79049.1	535	7e-23	130 - 189	98	59 / 60	minus	ABC00717 ABC00871 ABC00959 ABC53018
MLOC	MLOC_76240.1	474	7e-23	367 - 426	98	59 / 60	minus	ABC00717 ABC00871 ABC00959 ABC34970 ABC49923
JLOC1	JLOC1_52676.1	766	4e-23	169 - 228	98	59 / 60	minus
JLOC1	JLOC1_50839.1	462	4e-23	355 - 414	98	59 / 60	minus
Harvest21	ABC00959	698	3e-25	448 - 507	100	60 / 60	plus	ABC00959
Harvest21	ABC00957	700	3e-25	200 - 259	100	60 / 60	minus
Harvest21	ABC00229	738	3e-25	445 - 504	100	60 / 60	plus
Harvest21	ABC34970	260	1e-23	187 - 246	98	59 / 60	minus	ABC34970
Harvest21	ABC00937	734	1e-23	237 - 296	98	59 / 60	minus
Harvest21	ABC00717	813	1e-23	452 - 511	98	59 / 60	plus	ABC00717
Harvest35	U35_494	717	3e-25	448 - 507	100	60 / 60	plus
Harvest35	U35_394	777	1e-23	461 - 520	98	59 / 60	plus
Harvest35	U35_335	782	1e-23	457 - 516	98	59 / 60	plus

Contig Sequence (717 bp)

>U35_494 717 Hv_44K_v2
GCGCACTGAGCAAATCTAGCTATCTCATCATCTCCGGCTTAGCTCACCACCACTACTATT
GCTAGCTTGATCGAAATGGCTCGCGCTGCAGCTACTCAGCTCGTGCTGGTCGCCATGGTG
GCCGCTATGCTCTTCGTAGCCACCGACGCGGCCATCTCCTGCGGTCAGGTGAGCTCTGCC
TTGAGCCCCTGCATCTCCTATGCCCGCGGCAACGGCGCCAAACCGCCTGTGGCCTGCTGC
AGCGGCGTCAAGAGACTGGCCGGCGCAGCCCAGAGCACCGCTGATAAGCAAGCGGCGTGC
AAGTGCATCAAGAGCGCTGCGGGTGGGCTAAACGCTGGCAAGGCCGCCGGCATCCCCTCC
ATGTGCGGCGTCAGCGTCCCCTACGCCATCAGCGCTTCCGTCGACTGCTCTAAGATTCGC
TGATCGACCACTTGCTGTCATCCTTGCTGCCTATAGCTCCAGCTATCGATCCTGAGACGC
TGAGTACGTTGAGGTTATTTACACAACCACACACACATACACACACACACATATATATGA
ATAAATGCTCTCATATATTATCTCCATGTGGGAGAGAAAGAGAGAGAGAGAGAGAGAGAG
AAGTACGTACGTTGAGCCCGCTCTGCATGGCCGGCACACTGTTGTATCGATGTTATAATT
AATATTTACTTCCTTTGACTGGAAAAAAAAAAAAAAAAAATTTTTGTACTTGTACCA

Homology of Contig U35_494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None