barSeed - Barley Seed Development Database

Probe CUST_28712_PI390587928

Source Contig U35_41617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28712_PI390587928	Hv_44K_v2	TGAGTTCTGTGATGTGCGCACCAAGTTCCAGACCATGATGCAGCTGGGGCAGCAGATCGA	220	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367738	832	7e-23	527 - 586	98	59 / 60	plus	ABC08253
Harvest21	ABC36649	311	3e-25	221 - 280	100	60 / 60	minus
Harvest21	ABC08253	907	1e-23	508 - 567	98	59 / 60	plus	ABC08253
Harvest35	U35_41617	311	3e-25	221 - 280	100	60 / 60	minus
Harvest35	U35_17714	907	1e-23	508 - 567	98	59 / 60	plus

Contig Sequence (311 bp)

>U35_41617 311 Hv_44K_v2
CCGCCGCCGCGAATTCCGCCGGCGTCCGCCCCGCGCGCGCGTGCTCTGCGCCCCCGTGTC
GGCCCCGGCGGACCCCAGGACCTCCGGATCGGAGCCCCACGCGCCTCGCCATGGCGGCCA
ACGCGCTCCAGGCCCAGCTCAACGCGCTCCTCGCCTCCATGTTCGCCACGGGTATGGTGG
ACGACCAGTTCCAGCAGCTGCAGTCGCTGGACTGCAGGCCTCGATCTGCTGCCCCAGCTG
CATCATGGTCTGGAACTTGGTGCGCACATCACAGAACTCACTCCTAACAAGGGCCAACGC
CATGAGGCACC

Homology of Contig U35_41617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None