barSeed - Barley Seed Development Database

Probe CUST_28575_PI390587928

Source Contig U35_5157

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28575_PI390587928	Hv_44K_v2	CAACTATCTGTGCGTTTCATCTAAAACAAAATCTCAACGTTTTGTCCGAAATTCTCCAAA	1223	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.141	1.663	1.371	0.912	0.339	0.301
Raw	792.378	1871.216	1301.643	1361.487	181.363	173.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374727	1381	9e-22	1287 - 1341	100	55 / 55	plus	ABC12967
MLOC	MLOC_57045.1	485	9e-22	34 - 88	100	55 / 55	minus	ABC12967
JLOC1	JLOC1_36923.1	437	5e-22	80 - 134	100	55 / 55	minus
Harvest35	U35_5157	1310	3e-25	1224 - 1283	100	60 / 60	plus

Contig Sequence (1310 bp)

>U35_5157 1310 Hv_44K_v2
TCACGGTTTCCGCCCCCACACCCCTAAATCCTCCCGACTCGCCATTGTCCCGACCTCCCC
CGCGTCCCTTATCCTATTCCTGTTCGCCCCGCCGCCATGGAGGCCGTGCGCGCGTCGGCG
GCCTGGGTGGCCAGCCGCTCCTCCCACGTCAAGGTTGACATGCTAGAGATTGAGAAGGCC
GTGGACAAAATTCAGGGGAATGTTCCAAAAGTCGAGTGGGATTTCGAAGGAATCCATTAC
TTTGACAATGGACCGCTCACTGTGCAGTACCTCTTCGTCTTGGATGCGCTGAACTTTTGC
TTCTGGCCAGACAAGGACTTGACCTATGACAATTTGGCTTCTGGACTTAAGTTAGCATTA
GAGAAAGATAAGTCAGCACTTGATGCAGATCGTCTGAAGAATTATACTGGACCGCAACTT
CGAGAACTGCTGAATTGGCCACGCCCACTGCCAATTGAGGAGGAAAGAGTCCGCCTTCTT
CATGAGGTTGGTCTGGAGCTTGAAAGAAGCTTTGGCGGTGAGGCTGCTAATCTTGTGAAG
TCTGCAGGAAACTCTGCTGCATCTCTAATTGAACTGATTACCCGTCATTTTCCTGGCTTT
CGAGACCACTCACTTTACAAGGGACACCAGGTTTTCCTGTACAAGCGGGCCCAGATATTT
GTTGCTGATTTGTGGGGTGCTTTCAAGGGGGAAAACTATGGACAGTTCGACGACATTAAG
TCCATCACCATATTTGCCGACTATATTGTCCCTGCTGTGCTGAGGGAGCTTGGCATACTG
AAATACGAGTCGAGCCTATGTTGCTCCATCGACTCGAACCGCGAGATTGTGCCCGGAAGC
GAAGAGGAAGTGGAGATTCGTGCTTGTTCTGTTCATGCCGTTGAAAAAATGAGGGAGCTC
ATCAACAAAAAGTTTGGGAAACAGCTTCTGAGCATTGACATTGACCTCTGGCTCTGGTCG
GTAGGCGTTCAGAACATGGCGCTGTCTCATCACCGCACCCTCTCCATTTACTACTGAGGC
TACGCCAGCAGCAGCTGCCACGCTCCCTCTCGGCGCCCGAAGATGGGCCGCGTCTTGGGG
GTCTCCTTTAGCTGCTGTTACATATGGATACTGAAATTTTCCCCCTCTCCGAGGAGTGCA
CAAAAAGTGCAAACTGTTGCTACCGTAGGGTCATCAAGATTTACAGGTAGAACTGGTGTT
ACTGCGTATTGTGGTGGTAGTCCCAACTATCTGTGCGTTTCATCTAAAACAAAATCTCAA
CGTTTTGTCCGAAATTCTCCAAAAAAAAAAAAAAAAAAGCTCGAGGGGGG

Homology of Contig U35_5157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39980.1	307	0.0	protein\|GA22009-PA, putative, expressed
Brachypodium v1_2	Bradi1g22930.1	307	0.0
Arabidopsis v10	None