barSeed - Barley Seed Development Database

Probe CUST_28531_PI390587928

Source Contig U35_48005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28531_PI390587928	Hv_44K_v2	CACTTAGTTCTATGCTGTAGCATTTGGAGTATGCCCTTTTGCATCTAAACGGCCTGTGTT	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12310.1	475	3e-21	151 - 210	97	59 / 61	minus	ABC01056 ABC49693
JLOC1	JLOC1_8259.1	594	2e-21	124 - 183	97	59 / 61	minus
Harvest21	ABC49693	615	3e-25	1 - 60	100	60 / 60	minus	ABC49693
Harvest35	U35_48005	615	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (615 bp)

>U35_48005 615 Hv_44K_v2
AACACAGGCCGTTTAGATGCAAAAGGGCATACTCCAAATGCTACAGCATAGAACTAAGTG
TCTCACCAAGGCAAAAATAACAGAATTATATATCAAATTCAGAACCAACACAATTATAGA
CCGTAAACAGGGCTCACTTGATTCAGGGCTCACTTACTCATAGCTCATCGAACATGCTGC
ACGACAGCAGAAGTTTCAGACCCAACCAGTAACACTGCACCACAGTACTGTAGAAACGAA
GACACCAACGACAGACCCAGACGACACACTAGAAAAGACACGGACGACAACTCCAACTAA
GGCACGAAGACTTGTGAACACAGAAACAGAAGCACCATGTACAGGAGCTTACTGGCCACC
ACGGAGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGT
GCGGCCATCTTCGAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCC
CTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCCAG
TGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGCCACCACGGAGCCTGAG
CACCAGGTGGAGGGT

Homology of Contig U35_48005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	4e-52	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	2e-53
Arabidopsis v10	AT4G05050.1	229	1e-52	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229