- Probe CUST_28521_PI390587928
- Source Contig U35_24058
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28521_PI390587928 | Hv_44K_v2 | ATACATCTATGAAGTTACTCCATATTGTTTGGTTGACATGGTCATTAGTTGCCCATGAAA | 662 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.021 | 1.356 | 1.407 | 1.281 | 0.588 | 0.487 |
| Raw | 583.162 | 1238.047 | 1116.798 | 1601.811 | 257.436 | 227.901 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60701.1 | 3256 | 2e-24 | 2374 - 2433 | 100 | 60 / 60 | plus | ABC19146 |
| MLOC | MLOC_60701.3 | 962 | 2e-24 | 816 - 875 | 100 | 60 / 60 | plus | ABC19146 |
| MLOC | MLOC_60701.2 | 3005 | 2e-24 | 2123 - 2182 | 100 | 60 / 60 | plus | ABC19146 |
| MLOC | AK376123 | 2377 | 7e-23 | 2300 - 2359 | 98 | 59 / 60 | plus | ABC19146 |
| JLOC1 | JLOC1_39610.2 | 2288 | 8e-25 | 2124 - 2183 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39610.1 | 2539 | 8e-25 | 2375 - 2434 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19146 | 757 | 3e-25 | 36 - 95 | 100 | 60 / 60 | minus | ABC19146 |
| Harvest35 | U35_24058 | 757 | 3e-25 | 663 - 722 | 100 | 60 / 60 | plus |
Contig Sequence (757 bp)
>U35_24058 757 Hv_44K_v2 AATCTGAAGCCGGGAGCTGGCACGTGCCGACGACGACCGGCGACGACATCCAGAGCCCGC GGCAGTGGGTCTGCGCCACCAGGAAAACTTCGGAGAGACCGCCTTCTCCGCCTCCCCAGG CTCGCGCGACCAGCAAAACTTTGGAGGGACCGCCTTCTCCTCCGCCCCAAGCTCGCGCCA CCGGCAAAACTTTGGAGGGACCGCCTTCTCCGCTGCCTCAAGCTCGTGCCACTAGGAAAA CTTCGGAGGGACCGCCTTCTCTGCCTCCCCAGGCTCGCACCACCAGCAAAACTTTGGAGA GACCGGCTTCTTCGCCGCCTCAAGCTCATGCCGGTAGCAAAACTCTGGATAGACCGCCAT CTCCGCCGCCCCAAGCTCGCGCCGCCAGGAAAACTTCAGGGAGACTGCCTTCACCGCCAC CCCAAGCTTCTGCCACTAACAAAAATGCGGAGAGACCGTCTCCTTCACCAAAAGCAAGGT TAAGTGATCTTGGTTGGTAGCCATTGCTAGACCCCTGGGAAGTAGAAAAATAGCACCCAG ATTTGGGCCTATTTATTTTAGATTTAAAGAGAAACAGGGCAATTAGGTGCACCCTATAGC TTAGCAGCTCTTGATTGAGGCTGAGATGATTATGTAGCAAGTAAGTTGAGCTGCCCACCA ACATACATCTATGAAGTTACTCCATATTGTTTGGTTGACATGGTCATTAGTTGCCCATGA AAAATATAAATTTTTGCTGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_24058 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |