barSeed - Barley Seed Development Database

Probe CUST_28483_PI390587928

Source Contig U35_36041

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28483_PI390587928	Hv_44K_v2	TGTATGAGTAACATCAAGAACGGAGATAAAAAGAACCGCTTTAATTTAGTGTGTGGTAGA	46	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4514.1	1983	3e-21	26 - 83	98	57 / 58	minus	ABC17753
JLOC1	JLOC1_2815.5	1550	2e-21	1424 - 1481	98	57 / 58	plus
JLOC1	JLOC1_2815.4	1203	2e-21	1077 - 1134	98	57 / 58	plus
JLOC1	JLOC1_2815.3	886	2e-21	760 - 817	98	57 / 58	plus
JLOC1	JLOC1_2815.2	1070	2e-21	944 - 1001	98	57 / 58	plus
JLOC1	JLOC1_2815.1	1018	2e-21	892 - 949	98	57 / 58	plus
Harvest35	U35_36041	765	3e-25	47 - 106	100	60 / 60	minus

Contig Sequence (765 bp)

>U35_36041 765 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTCATCTACCACACACTA
AATTAAAGCGGTTCTTTTTATCTCCGTTCTTGATGTTACTCATACAACATGATAATAAAT
TGAAATATCCCAGAACAAGAAAAGGGAAAGAAAGAAGAAGAAAAAAAGATTGCATCTAGC
TCACTCGTTTTCTACTTGCACTCCCCCAATTGCGGGAAGCCAACTAGGGCAAACAATGAA
GGATTAATACAAAGGTCCGATTATTTCATTCATAACAAAAGAGAGACAGGGGTTGAACAA
AGGAAGAAGAGCGCGGTACCATCGCAGGACCTCGTTGCGGGTTGGAAGAATTGGTCCCTG
CTACCACCATCATGTTTCGACCTAACCATCATTGGGAGGCGCCTGTGATTCCAAGCCATC
AAAGACGAGATGAACGCACCAGCGGCCGCTAAAGGCAATATTTTGGCACTTGGCAGAGAA
AGGCACTCTAGTATACACGTAATGTCCAAGGCAACAATGAAGGAGAAAAAGGAAAGAAAA
GAATATAAAGAACACAGCACAGATCCTTTATCCTCCTCGTAAGGAAGATCAGCATCCCAG
AGAGGACACCAACACATTGATTACTCGACGCCCTCTAATCAGATTTCTTAGCAAGACTCA
GCAAGACTCCAGCGCTAAGACATGTAGCTACAACGCCTAGAGAAGCCTCTGTGGAAACAT
GGTATCCGAAAAAGTCTAGGATCATTTTTGATCCAATGAATCCCA

Homology of Contig U35_36041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None