barSeed - Barley Seed Development Database

Probe CUST_28409_PI390587928

Source Contig U35_16256

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28409_PI390587928	Hv_44K_v2	GGTGGCTTGGAAACCTCCGGTCTGCCATCTTTGGTACATAATATAGAACTATCTTATCTT	1117	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62398.1	6168	2e-24	182 - 241	100	60 / 60	minus	ABC05119 ABC14390
JLOC1	JLOC1_40836.1	2925	8e-25	2549 - 2608	100	60 / 60	plus
Harvest21	ABC05119	1516	3e-25	1439 - 1498	100	60 / 60	plus	ABC05119
Harvest35	U35_16256	1217	3e-25	1118 - 1177	100	60 / 60	plus

Contig Sequence (1217 bp)

>U35_16256 1217 Hv_44K_v2
ATATTGAGACAGTTCTGGACAAGGTTATGATGCTGTTCAGGTACCTGCAGGAGAAAGATG
TTTTTGAGAAGTATTACAAGCAACACTTGGCAAAACGCCTTCTATCTGGGAAAACTAGTT
CTGATGAAGCTGAGAGGAACATGCTTGTGAAGCTGAAGACTGAATGTGGCTACCAGTTTA
CCTCAAAGTTGGAAAGCATGTTCACTGATTTGAAGACGTCTCAGGATACGATGCAAAGTT
TCTATGCCAATCTTGCTGGTGACGTTGATGGCCCAACTATATCTGTCCAGATACTCACCA
CTGGATCCTGGCCAACACAACCATGCGCTACCTGCAATCTTCCACCTGAGATCCTTGTTG
TTTCTGAGCAGTTCCGGGCACACTACCTTGGCACGCACAATGGCAGGAGGTTGACATGGC
AGACAAATATGGGGAATGCAGACATTAAGGCAACATTTGGAGACCGGAAGCATGAGCTAA
ATGTCTCAACTTACCAGATGTGTGTCCTGATGCTATTTAACTCAACAGATACTCTGACCT
ACAAGGAAATTGAGCAGGCCACAGCCATACCATCTGTTGATCTGAAGCGCTGCCTCCAGT
CTCTGGCTTGTGTGAAGGGCAAGAACGTACTGCGGAAGGAGCCCATGAGCAAGGATATAT
CTGATAGCGACTCTTTCCACTTCAACGACAAGTTTACCAGCAAGTTGGTGAAGGTGAAGA
TTGGCACTGTGGTTGCACAGAAGGAGTCAGAGCCAGAGAAGCAGGAGACCCGCCACAGGG
TCGAGGAAGACCGGAAGCCCCAGATTGAGGCCGCCATCGTGAGGATCATGAAGTCCAGGA
GGGTCCTGGACCACAACAGCATAGTCACAGAGGTTACGAAGCAGCTCCAGGCACGCTTCC
TGCCGAACCCGGTGGTGATCAAGAAAAGGATCGAGTCCCTGATTGAGCGTGAGTTCCTGG
AGAGGGACAAGGTAGATAGGAAGCTCTACCGCTATCTTGCGTAATTAGGTTTCTTTTGCT
GTCGAAACATTAGACTGTCCATGAACGAATGAACAAAAACCATGTCGTCCCGGTACCGTT
GACTTGGATCTTGGCTGTAGTTCTTCTGCAGAGTCGTGGTGGCTTGGAAACCTCCGGTCT
GCCATCTTTGGTACATAATATAGAACTATCTTATCTTAAAAAAAAAAAAAAAAAGAAAAC
AAAAAAAAAAAAAAAAG

Homology of Contig U35_16256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55030.1	732	protein\|cullin, putative, expressed
Brachypodium v1_2	Bradi3g59330.1	737
Arabidopsis v10	AT1G26830.1	732	\| Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 \| cullin 3 \| chr1:9296063-9298374 FORWARD LENGTH=732