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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_28408_PI390587928Hv_44K_v2CATATCATTGTATGTTGATGACAAGCTTCGGAAAGGTGTGAAAGGAGCTGCCAATGAAGA1355GeneList: floralwhite
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8240.8121.4731.3791.0561.034
Raw 172.567240.795412.537538.547163.574175.997



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_62398.161682e-241361 - 142010060 / 60minus ABC05119 ABC14390
MLOCMLOC_62398.225542e-241141 - 120010060 / 60minus ABC05119 ABC14390
JLOC1JLOC1_40836.129258e-251370 - 142910060 / 60plus
Harvest21ABC0511915163e-25260 - 31910060 / 60plusABC05119
Harvest35U35_1625720083e-251356 - 141510060 / 60plus



Contig Sequence (2008 bp)

>U35_16257 2008 Hv_44K_v2
ACAATCCCAGCTTATAAGGGAAAAAACACACAGGCGCACACGCCACGCGAAACGAGATAC
CTAGACGGCCGAGGCCCATCGTCTCGTCCACCTCCCATCCCCTTCCCCTCCCCTCCTCGC
CGGAACCCTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTCGGTCGGCAGGGAGGGCGG
ATCGCCGCGGCGGCGCGGGCGGCGGCGGCGGCGGAGGCGGAGATGAACCCCCAGAGGAAG
CGCATCCCCAAGATCGAGCCCTTCAAGCACCGGGTGGAGGTCGACCCCAAGTTCTTCGAC
AAGTCGTGGAAGAAGCTCGATGACGCCATCCGCGAGATTTACAACCACAACGCCAGCGGC
CTCTCCTTCGAGGAGCTCTACAGGACTGCGTATAACATGGTTCTTCACAAGCATGGTGGG
AGGCTCTATGATAAATTGGCAGAGAACTTGAAAGGACACCTTAGAGAAATGGGCAAATTA
GTAGAGGCTGCCCAAGGTGGTTTGTTCTTGGAGGAGCTACAGAGAAGGTGGGCTGATCAT
ATCAAGGCATTACAGATGATCAGAGATATACTCATGTATATGGATAGAACATTTATTCCA
TCTAGCAAAAAGACACCTGTCTTTGAACATGGTCTAGAACTGTGGAGAGACATTGTTGTC
CGCTCTCCCAAAATTCATGGGAGATTGGTCGACACACTTCTGGAACTCATTCATAGAGAG
AGGATGGGTGAGATGATAAACAGAGGTTTGATGAGGAATACAACCAAAATGTTGATGGAA
CTCGGGTCTTCTGTCTACCAGGATGACTTTGAGAGGCCATTCCTTGAGGTGTCTGCAAGT
TTCTATAGTGGTGAGTCACAGCAGTGCATTGAGCGTTGTGACTGTGGTGAGTACCTGAAG
AATGCTGAGAAGAGGCTTGCTGAGGAATCAGAACGTGTTACGCTGTATATGGACGCCAAA
ACTGCAGACAAGATAGCTAATGTTGTCGATAAAGAGATGCTCACGAATCACATGCAGAGG
TTGTTTCTAATGGAGAACTCTGGTCTTGTGAATATGCTCATTAATGACAAGCATGAAGAC
CTGACCAGGATGTATGACTTGTTTAAACGTGTCCCTGATGGGCACTCATCCATTAGATCT
GTCATGGCTTCTCATGTTAAGGAGACTGGAAAGATTTTAGTGACTGACCCAGAGAGATTA
AGGGACCCTGTTGATTTCGTCCAGCGTCTTCTGAATGAGAAGGACAAGTATGATGAGATT
GTCAGTGTTTCATTCGGCAATGACAAGACTTTCCAGAATGCTTTGAATGCCTCATTTGAG
CATTTCATTAACTTGAACAACCGCTCCCCTGAGTTCATATCATTGTATGTTGATGACAAG
CTTCGGAAAGGTGTGAAAGGAGCTGCCAATGAAGAGGATATTGAGACAGTTCTGGACAAG
GTTATGATGCTGTTCAGGTACCTGCAGGAGAAAGATGTTTTTGAGAAGTATTACAAGCAG
CACTTGGCAAAACGCCTTCTATCTGGGAAAACTAGTTCTGATGAAGCTGAGAGGAACATG
CTTGTGAAGCTGAAGACTGAATGTGGCTACCAGTTTACCTCAAAGTTGGAAAGCATGTTC
ACTGATTTGAAGACGTCTCAGGATACGATGCAAAGTTTCTATGCCAATCTTGCTGGTGAC
GTTGATGGCCCAACTATATCTGTCCAGATACTCACCACTGGATCCTGGCCAACACAACCA
TGCGCTACCTGCAATCTTCCACCTGAGATCCTTGTTGTTTCTGAGCAGTTCCGGGCACAC
TACCTTGGCACGCACAATGGCAGGAGGTTGACATGGCAGACAAATATGGGGAATGCAGAC
ATTAAGGCAACATTTGGAGACCGGAAGCATGAGCTAAATGTCTCAACTTACCAGATGTGT
GTCCTGATGCTATTTAACTCAACAGATACTCTGACCTACAAGGAAATTGAGCAGGCCACA
GCCATACCATCTGTTGATCTGAAGCGCT



Homology of Contig U35_16257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g55030.17320.0protein|cullin, putative, expressed
Brachypodium v1_2Bradi5g23650.111130.0
Arabidopsis v10AT1G26830.17320.0| Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732