barSeed - Barley Seed Development Database

Probe CUST_28386_PI390587928

Source Contig U35_30554

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28386_PI390587928	Hv_44K_v2	TACACTTACTGTGGTCTGGCCTCATCTTAATCAGTTCTCACCTGCAAGCCTATAGAGATG	108	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252705.1	1924	7e-23	121 - 180	98	59 / 60	plus	ABC02996 ABC02999 ABC39745
MLOC	MLOC_47904.1	1070	7e-23	893 - 952	98	59 / 60	minus	ABC02996 ABC02999
JLOC1	JLOC1_30828.1	1073	4e-23	120 - 179	98	59 / 60	plus
Harvest21	ABC30519	441	3e-25	109 - 168	100	60 / 60	plus
Harvest35	U35_30554	441	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_30554 441 Hv_44K_v2
CACCCACCACCACCACCTCACTCTCTCTGGCTCGCCAGTAGACATTTGCTCGTATTCTGC
AGATCACGCTGCACAAGATCGCATCTCTAGTGGGCGCGCAGAGTGCATTACACTTACTGT
GGTCTGGCCTCATCTTAATCAGTTCTCACCTGCAAGCCTATAGAGATGGCGGACAAAGTC
GTGGCCACCTACTACTACCCTGCCATGGAGGTAGCCGCCGCCGAGCTCGGCCAGATCGCC
GGCTCCAAGCTCGACGACGATGGCCGCAACAAGCGCACCGGCACGATGTGGACGGCGAGC
TCGCACATCATCACGGCGGTGATCGGGTCGGGGGTGCTGTCGCTGGGCTGGGCCATCGCG
CAGCTCGGCTGGGTGGCCGGCCCCGCCGTCATGCTGCTCTTCTCCCTCGTCACCTACTTC
ACTTCGTCTCTGCTCGCCGAC

Homology of Contig U35_30554 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None