barSeed - Barley Seed Development Database

Probe CUST_28351_PI390587928

Source Contig U35_30564

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28351_PI390587928	Hv_44K_v2	TTCTAAGAGTAATTTTGATATGATGGATGGATGAAGGTGTTCGTGGTGGGTCACGACTGG	136	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63331.3	2381	2e-24	302 - 361	100	60 / 60	plus	ABC05553 ABC05554 ABC37826
JLOC1	JLOC1_41466.2	5383	8e-25	2715 - 2774	100	60 / 60	plus
Harvest21	ABC05552	845	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_41974	687	3e-25	276 - 335	100	60 / 60	plus
Harvest35	U35_30564	706	3e-25	137 - 196	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_30564 706 Hv_44K_v2
TGCACGTGAGTTTATTCGGTCTCGCCATTATTAATTCCGGCCGGCAAAAAGGAGAGAACA
AAACTGCACTGTTCCGATCGTCAGATCATCATCATCATCATGGTTGATTCAGTGGATTAA
GAGTGAATAATCCATTTTCTAAGAGTAATTTTGATATGATGGATGGATGAAGGTGTTCGT
GGTGGGTCACGACTGGGGCGCCATCATCGCGTGGTACCTGTGCCTCTTCCGGCCGGACCG
GGTGACGGCGCTCGTCAACACCAGCGTCGCCTTCATGCGCCACGTCTTCATCCGCGCCGG
CGCCGGCGCCGTCAAGACCACCGACTACTTCAACCAAGCCTACGGCCCGACCTACTACAT
CTGCCGCTTCCAGGTCTCCTCCTCCGCTCCTCTGTCTATACTACCGACTCCGACGACGTC
TGGACTAACCATCGACGACGGCGACGACGACGTGGTGCAGGAGCCCGGGGTGGCGGAGAA
GGAGTTCGCGCCGGCGCACGCGAGGCACCTCATGACGCGCATCCTGAGCGACCGCTTCAG
CGAGCGCGCCGCCGGCAAGGAGACGACGGAGGACGCCACCGTCGAGGCGGCGGCGCTCCC
GGCGTGGCTCACGGAGGCGGACATCGACTACTTCGCGGCGGCGTTCGAGAAGACGGGCTT
CACGGGCGCCATCAACTACTACCGCAACATGGACCGGAACTGGGAG

Homology of Contig U35_30564 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g03110.1	336	6e-71
Arabidopsis v10	None