barSeed - Barley Seed Development Database

Probe CUST_28336_PI390587928

Source Contig U35_16279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28336_PI390587928	Hv_44K_v2	GTACAACAGTTCAGAACATTTTATAAGTTGTCAGCCACTGCATTTTTGGACATCCAAAAA	1151	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.641	1.752	0.977	0.967	0.406	0.505
Raw	355.543	598.222	290.726	472.109	66.522	89.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15148.1	1282	3e-22	1227 - 1282	100	56 / 56	plus	ABC04979 ABC04981 ABC04982 ABC04983
JLOC1	JLOC1_10368.2	1292	4e-23	1214 - 1270	100	57 / 57	plus
JLOC1	JLOC1_10368.1	1298	4e-23	1220 - 1276	100	57 / 57	plus
Harvest35	U35_16279	1223	3e-25	1152 - 1211	100	60 / 60	plus

Contig Sequence (1223 bp)

>U35_16279 1223 Hv_44K_v2
CAGGCGCCGCCGACGAGTCACTGACCGAGATGGCGAGCTCGGCGCTGAGACGATCCCTTC
CGCGGCGCGGCTTGCTCCGCCGCATCCTCCCTTCCCACCCAGCATCCGCCGCCACCTCCT
CGTTCCGTCGCTCCTTCCAGTCCGAAGAGGGCGCGGCAGGCGAGAGCACGGCCGACTTTG
AAAGGCGGGTGTTTGGAGACCAGAGGAAGCCAGATGACAACTCGTTCTTCGGGAAGCTCG
ATGGGGTTGGGGACTCCTTTGGAAGAAGACATGGCACAGGCTCTGGGATGGGTGTCTTCA
GTCAGCAGGGTGAGATGGGTAACTTTGGGTTGGGTGGGAGAAGTGGTTATGTGTTCATGG
ACGGTTTCGATTCCTTGAACGATGGCATGAACGAGAAATTGGATGACGCGGCCCGCACCT
TTCATATGACGGAGGAGGTTGAGGACGATGACTATGATTTCAGGCCAGATGTGAATTACA
GGCGAGGCTCGACTTACAATGTCCGGGATCTTGACCTGACAAAACCTGCAGCCCCAAGGA
ATCCTCCTAGACCTCAGTTTGAAACATCTACAAAGGAAGTTTTAAGTAAAGCTGATTTTA
GGAATGTTAGATTCCTCGCCAACTTCATTACAGAAGCTGGCATTATCATTAAGAGGAATC
AGACCAAGATAAGTGCGAAAGCTCAGCGCAAGGTCGCGAGAGAGATTAAAACAGCTCGTG
CACTGGGGCTGATGCCTTTCACGACGATGGGCAAGAGGCCATTCATCTTTGGCAGAAGTG
CGGAGGAGGATGCTTCAGAAGAGGAATATGGGTATGAATTCGTCCAGAAGGATGCTGGGC
CTGAAGACACTGCTGGCGATGCTGTGCCCGATGTGGAGACCGCGTAAACAATCTGGAGCT
GTTGGTTATTTATAGAAAAAGAATCGCCTCTACTTAGTGCCTCGTGTTATGTACATTACA
TTCTGTTTTTCCTCTGTAGTATGGATGCCTCTTGAGAATAATGGATGCTTACCCCCCGCA
AAACATGAAACAGTTGATAGTATTGACTTCTGGATAAGCTATTCCTCATTTTCAGGTTGC
TTCTCTCCAATTCTATGGTTACCACCTTAGGCATAATATCAAGCCCTTCTAAACAAGGCA
CCATTATGAATGTACAACAGTTCAGAACATTTTATAAGTTGTCAGCCACTGCATTTTTGG
ACATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35690.1	275	2e-85	protein\|ribosomal protein S18 containing protein, expressed
Brachypodium v1_2	Bradi2g58736.1	279	3e-118
Arabidopsis v10	None