- Probe CUST_282_PI390587928
- Source Contig U35_32037
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_282_PI390587928 | Hv_44K_v2 | TGCTGTACCTGTGCTTCGGCACGATGTCGTCGCTGCCTGGCAAACAGATCGAGGAGCTGG | 325 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.181 | 0.180 | 1.361 | 2.529 | 1.081 | 0.860 |
| Raw | 6.277 | 7.834 | 64.140 | 185.743 | 28.177 | 25.019 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358082 | 1829 | 2e-24 | 900 - 959 | 100 | 60 / 60 | plus | ABC13294 ABC45672 |
| MLOC | AK361805 | 2242 | 2e-24 | 1592 - 1651 | 100 | 60 / 60 | plus | ABC09843 ABC09844 ABC13294 ABC18182 ABC45672 |
| MLOC | MLOC_73216.1 | 1529 | 2e-24 | 419 - 478 | 100 | 60 / 60 | plus | ABC13294 ABC45672 |
| JLOC1 | JLOC1_48739.1 | 1339 | 8e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32037 | 498 | 3e-25 | 326 - 385 | 100 | 60 / 60 | plus |
Contig Sequence (498 bp)
>U35_32037 498 Hv_44K_v2 TCGAGCACTGTTGGCCTGGGCGCGCTCGGTCTCCCCGTCCCGTCACCCGAGTCCTTCCTC ACCGAGGAGTTCATGGGGCTGGTCGAGCGGCAGGGCGGGCTCGGCGTGCCCGGCGCCGGG TTGCTCCTCAACTCGTGCCGCGCGCTCGAGGGAGAGTTCATCCACGCGCAAGCCGAGACC CTGTCCCTCGACGGCAAACGGCTGTTCTCCATCGGCCCGCTAAACCCACTGCTGGAGCAG GACCTGGACGCGACCAAGCCCGCCCTGTCGGTGCAGCCGCGGCACGAGTGCATGGACTGG CTTGACAAGCAGCCGCCATCATCGGTGCTGTACCTGTGCTTCGGCACGATGTCGTCGCTG CCTGGCAAACAGATCGAGGAGCTGGCCGGCGCGCTGCAGAGCTGCGAGCAGCGCTTCATC TGGGTGCTGCGCGACGCCGACCGCGCCGACATCTTCGCGGAGGCCGGCGAAAGCCGGCAC GCCAAGCTGATGTCCGAC
Homology of Contig U35_32037 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |