barSeed - Barley Seed Development Database

Probe CUST_28299_PI390587928

Source Contig U35_30980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28299_PI390587928	Hv_44K_v2	TTTACATTTCCGCCCCATGCCTGGTGAAAAGTAACCGCAGACAGGCCAGGTCAGGTCCCT	65	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52948.1	965	2e-24	273 - 332	100	60 / 60	minus	None
MLOC	AK372211	3891	7e-23	188 - 247	98	59 / 60	plus	ABC11306
JLOC1	JLOC1_33972.1	782	8e-25	100 - 159	100	60 / 60	minus
Harvest21	ABC31117	557	3e-25	66 - 125	100	60 / 60	plus
Harvest35	U35_30980	557	3e-25	66 - 125	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_30980 557 Hv_44K_v2
CGCCAGCAAGCAAACCGAGAGGAAAATCCGGTGTCGTTCGTTTTACCCCTCTGTGTGGAG
TTGGTTTTACATTTCCGCCCCATGCCTGGTGAAAAGTAACCGCAGACAGGCCAGGTCAGG
TCCCTCCAGCGGAGAGAAGAGATGCCCACGCCGGTGCCCGCGGCGAGGCAGTGCCTGTCG
CCGGCGGCCGTGACGGCGCTCGACGCCGCGGTCGTCTCCGCGCGCCGCAGGGTGCACGCG
CAGACCACGTCGCTGCACCTCGTCGCCGCGCTGCTGGCGCAGCAGGCCCCGCCGCTCCTG
CGCGACGCGCTCGCGCGGGCCCGCAGCGCCGCCTACTCCCCGCGCGTGCAGCTCAAGGCG
CTCGAGCTCTGCTTCGCCGTCTCCCTCGACAGGCTCCCCTCCGCCTCCTCCGCGTCCGCG
TCGACGTCGGCCTCGGGCGCGGACGAGCAGCCGGAGCCGCCCGTGTCCAACTCGCTCATG
GCCGCCATCAAGCGCTCGCAGGCCAACCAGCGCCGCAACCCGGACACCTTCCACTTCTAC
CACCAGGCCGCGTTCCA

Homology of Contig U35_30980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None