barSeed - Barley Seed Development Database

Probe CUST_28266_PI390587928

Source Contig U35_28675

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28266_PI390587928	Hv_44K_v2	TGATGATGTACTACCATGAATGGACGTTGGCTTGTTTGGTCTCTGCAGGATAATCCTAGG	396	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52847.3	1680	2e-24	712 - 771	100	60 / 60	plus	None
MLOC	MLOC_52847.5	1726	2e-24	642 - 701	100	60 / 60	plus	None
MLOC	MLOC_52847.2	1871	2e-24	798 - 857	100	60 / 60	plus	None
MLOC	MLOC_52847.4	3981	2e-24	656 - 715	100	60 / 60	plus	ABC03876
Harvest21	ABC27677	614	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_28675	614	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_28675 614 Hv_44K_v2
ACGGGGGACCGGCCACGCGGTGCGGGGCAGAGGGAGGAACAAGAGGAAGTGGACGGTGGA
CGAGGACGAGGAGCTGGTGAGGGCCCTCCGCGAGGTGTCCGCCGACCCCAGGTTCAGGGC
CGACGGTGGGGCCTTCAAGAACTGCTACACGCAGGGGATAGAGGCCCTCCTCGCGCGGCG
GCTGCCCGGCCGCGCCATCAGGGCCAGCCCCCACGTCGACTCCCGGCTCAAGGTCCTCAA
GCGCAAGTTCTGCGCCCTCAAGGACATGCTCGCCTCGCCGGGCTTCTCCTGGGACGCCTC
CAGGAATGTCCTCCGCTGCGACAAGCACCGCTACGACGACTACTGCAAAGTCAGCCGCCA
TGTTTTAGCTAGTGTTGTTGGCAAATGTGTCTTTCTTGATGATGTACTACCATGAATGGA
CGTTGGCTTGTTTGGTCTCTGCAGGATAATCCTAGGGCAAGGGGGATGTACGGCGTTCCG
TTTCCGCATTTCGACGCGTTCGACGCGGTGTATGGCAAGGATAGGGCCGCCAGGGAGGCG
GTGGAAGTGTCCGAGGAAGCGGCCGCCGGCATGGAGAATGGGGATATGAGCGAAGATGGA
GGTGATGAAGAGGA

Homology of Contig U35_28675 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45330.1	393	2e-53	protein\|expressed protein
Brachypodium v1_2	Bradi1g19520.1	391	9e-62
Arabidopsis v10	None