barSeed - Barley Seed Development Database

Probe CUST_28236_PI390587928

Source Contig U35_42979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28236_PI390587928	Hv_44K_v2	AGTGTTCATTTCTTCTTGTCGCAGTATCACACACCGTTGTAAACTGCATTCTTCTTGCTG	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47445.1	996	2e-24	680 - 739	100	60 / 60	minus	ABC09264 ABC26240
MLOC	MLOC_47445.3	1019	2e-24	703 - 762	100	60 / 60	minus	ABC09264 ABC26240
MLOC	MLOC_47445.2	1024	2e-24	708 - 767	100	60 / 60	minus	ABC09264 ABC26240
JLOC1	JLOC1_30593.6	838	8e-25	234 - 293	100	60 / 60	plus
JLOC1	JLOC1_30593.5	736	8e-25	234 - 293	100	60 / 60	plus
JLOC1	JLOC1_30593.3	775	8e-25	216 - 275	100	60 / 60	plus
Harvest21	ABC39055	617	3e-25	558 - 617	100	60 / 60	plus
Harvest35	U35_42979	617	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_42979 617 Hv_44K_v2
GGGATCCGGTGGTGGAGCAGCACGTCCTCCCTTGTTCACCAGCGTTCCTGATTGAACTCA
ACTGACATTATGCAGCTGGTTCTCATCTTGATTGAAGACAGAAAACAATTGGCACTCGAA
CTATCTTCACAGATTAAGGCACGTCTTACAGAAAGGTTTGCAGCCAAAGAGCAATATAAG
CAATCCAAGGAGCTTGATAGGCTGACTAGGCGGCCGGCGTGCTCGCTTGGGGCGTCGGAC
CAAGCACGGCAGCATCGGCGGCACCGTCGTGGGTCTGGTGTCGATGCTCACCACCAGCAC
TGGCTGCAAGATAGTCGCGTTGCTCAGGCGCCACAGCGGCAGCATCCTCCGGATGCAAGA
TGGTCGCGATGCTCAGGTGGCACAACGGAAGGAGGGTCCGGGCGCCGCCGGTGTTCCTCA
TCGTACTGCCCGTGCTGGCGGGTGCGCTGCACAGGGAGGTGGTCGCGTGAAGACTGGAGA
TGCATCCTGCCACTCTGATGGTGTAAAGCTAGATGTCTTGATTGTTTGGGGGATCGAGTG
TTTATTTTTTTTGACACAGTGTTCATTTCTTCTTGTCGCAGTATCACACACCGTTGTAAA
CTGCATTCTTCTTGCTG

Homology of Contig U35_42979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None