barSeed - Barley Seed Development Database

Probe CUST_28204_PI390587928

Source Contig U35_16153

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28204_PI390587928	Hv_44K_v2	TCAAGTCGTTTGTGGCACAACTTCTGTTGGCTCAAGATAATCATATTTGTGGCTTTATGC	1066	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.390	0.460	0.687	1.542	1.317	1.929
Raw	41.091	72.968	99.670	341.654	102.919	167.720

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55890.1	1799	2e-24	406 - 465	100	60 / 60	plus	ABC06802 ABC20237 ABC38595
MLOC	MLOC_55888.3	2455	2e-24	889 - 948	100	60 / 60	plus	ABC06802 ABC20237 ABC38595
Harvest21	ABC06803	1126	3e-25	1067 - 1126	100	60 / 60	plus
Harvest35	U35_16153	1126	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_16153 1126 Hv_44K_v2
GACGAGGCCCTTCCTTCCGCCCCAACCGAACCGAACCCCCCACAAACCCCGTAACCTCGC
ACCCCCACCCGAAGGCACGAGAAACACCCCGAGAAGAGAGAGAGAGAGAGAGCTCCGGAG
ATGTCGGCGGACGAGCTGCGGATGGACCTGGAGGAGCTGCGGCGGCTGGAGGGCCTCGCC
ACGCGCCCCCGCGTCGTCTCCCTCCTCTCCAACGAGATCCGCAGCGTCGACGCCAAGCTG
GCCTCGCGGGCTGCGCCCGTGCCGACGCCGGCGCCGCAGGCGCTCGCGGCGGCGGCGGCC
CCTGCTGGTCCGAGCTACGTCACGCTGGGGTCGTTCAGCTGGGACCAGGACAACGAGAAG
ATCAGGGTCTATGTTTTCCTTGAGAATGTCGACCAAGAGAAGGTGGAGACTACTTTCAAG
CCAATGTCAGTGGATATCAAGTTTCATGATGTTAAAGGCAAGAACTATAGGTGTGCCATC
CCAAAACTGAACAAAGAAATAGTTCCTGAGAAATGCAAGATTGTGGTCAAGCCTACAAAG
ATTGTCATCACCCTGTGGAAAGCTTCTTCCGGCAATTGGTTGGACCTACACTACAAGGAA
GACAAGTTTAAGCCAAGCATGGGCAAAGAGAAGGATCCAATGTCGGGAATCATGGATTTA
ATGAAGGGCATGTACGAGGAAGGTGACGAGGATATGAAGCGCACAATAGCCAAAGCGTGG
TCTGATGCCAGATCTGGGAAGACGGCTGATCCAATGAAGGGATTGCCTTGAGCTGGTAGC
GGTTTTGGTTTCGAGAGCTGCTGTATGTGCTGATGAGCTAGTCCGTGCATTCAGCGTGGT
TTAGAGTACTGTCGTGAGTATCCGCATCGCATGTGTGAGATCAATTGATACCTGTCTGAT
AATGATGGGGCATTATCAGAATGCTTGTTTCCTCGGGTGTTGGATTGGCCTAATTTGTGC
ATTCTCGCATTGTGATGTCTGTATTTGAACTGAAAAGAAAATGAATGCATGCTTGGGTGA
TGAGAAAAAAAAAAAAAAGCGCGCGCGATTCACTTGTTTTTTTCGTTCAAGTCGTTTGTG
GCACAACTTCTGTTGGCTCAAGATAATCATATTTGTGGCTTTATGC

Homology of Contig U35_16153 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55270.1	227	5e-101	protein\|SGS domain containing protein, expressed
Brachypodium v1_2	Bradi2g50300.1	218	1e-103
Arabidopsis v10	AT1G30070.2	229	3e-78	SGS domain-containing protein \| chr1:10546794-10548072 REVERSE LENGTH=229