barSeed - Barley Seed Development Database

Probe CUST_28193_PI390587928

Source Contig U35_42422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28193_PI390587928	Hv_44K_v2	ATTATTGAAGGTATATATGCACTGAGTGATAAGTTACGGCCAATACTGGATCTGCGTGTT	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55892.8	1972	2e-24	567 - 626	100	60 / 60	plus	ABC18593
MLOC	MLOC_55892.7	2384	2e-24	1808 - 1867	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.2	2715	2e-24	1870 - 1929	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.3	2782	2e-24	1937 - 1996	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.4	2752	2e-24	1858 - 1917	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.1	2677	2e-24	1887 - 1946	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.5	2641	2e-24	1917 - 1976	100	60 / 60	minus	ABC18593
JLOC1	JLOC1_36096.2	2617	8e-25	688 - 747	100	60 / 60	plus
JLOC1	JLOC1_36096.1	2615	8e-25	619 - 678	100	60 / 60	plus
Harvest21	ABC38081	681	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_42422	681	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_42422 681 Hv_44K_v2
GCCCTTCCTTCCTCCAGCTTCTCCTACTCGATCGAAGCCGAGCAGCGGCGCCTGACACGG
AGAACAGGGGCGACCGGAGCCCTTCTCCCCCGCCTCCGCCCCTCCGGTTAAAGTTGTCTT
GGAGACTTCTTTTGAATGGAGCGTAGTGATTCCCTGTCCGAGTCGCCAAGGAAGCGGAAT
GGCCTTCTGCGAGACCAGGTGCAGCTGGTGAAAAGGAAGGACACAAGCCGCTATGAGATC
GTCCCCTTTCCAGAGCCACTGTCTTTTGAGAAAGGCTTCTTTGTCATGATCCGCGCCATC
CAGCTCCTGGTGCAGAACAATGAAGGGATAATATTTGTGGGAGTTGCTGGCCCCTCTGGG
GCTGGTAAGACGGTGTTTACCGAGAAGGTCCTCAATTTCATGCCCAGTGTTGCTGTGATA
TCAATGGACAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGATCCACGT
CTAACAGACTATGACACACTGTTGGAAAATATTCATGGTCTGAAGGAAGGAAGGTCCGTT
CAGGTTCCAATATATGATTTCAAGACGAGTTGCCGGACTGGATACAGAACAGTTGATGTC
CCTAGCTCCAGGATTGTTATTATTGAAGGTATATATGCACTGAGTGATAAGTTACGGCCA
ATACTGGATCTGCGTGTTTCT

Homology of Contig U35_42422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47860.2	653	5e-110	protein\|uridine kinase, putative, expressed
Brachypodium v1_2	Bradi3g52910.1	654	9e-117
Arabidopsis v10	AT1G73980.1	643	1e-93	Phosphoribulokinase / Uridine kinase family \| chr1:27820292-27823527 REVERSE LENGTH=643