barSeed - Barley Seed Development Database

Probe CUST_28175_PI390587928

Source Contig U35_16161

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28175_PI390587928	Hv_44K_v2	GTTTACTGTCAACTGTTGGTGGTTTAAAGAATTTTCAGATGATGCTTGCTGGTCAAAAAA	2182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373462	2144	9e-22	2046 - 2100	100	55 / 55	plus	ABC06447
JLOC1	JLOC1_17946.1	1177	5e-22	978 - 1032	100	55 / 55	plus
Harvest21	ABC06447	1794	2e-22	1680 - 1734	100	55 / 55	plus	ABC06447
Harvest35	U35_16161	2322	3e-25	2183 - 2242	100	60 / 60	plus

Contig Sequence (2322 bp)

>U35_16161 2322 Hv_44K_v2
GTTCCAACCCCAAAAGAAAAACCAGAGATTACCGTCGTCCTGGTCGTCGTCGTCGTCGTC
GTCGTCATCCCATCCCCTCCCCCCTACCCCAGAGAACTCGTATAAAAAATGGGCGAGCCA
CCAAGATCCTGTCCTTTTGTGCGACCCGACTCCTCCAACTTGCAGTAGCTCCACGCAGGA
TAAAGAGGGTTGGAAAGCCCAAGAATCTGCAGAGCCCCACTCCGAGATCCCGAGCTTTCT
GCGTTTTCCTCCGTCGCAATCCGCAGGAATCCCCATCGGAGGTTTCGCGGCCTCCGTGCC
GTTCTTGATCCAGGGCGCGCGCCAAGGACTCGCCAATGCAGCCGGACGCGAGCGGCAACG
CTGCCGGCGGCGGCGGCGCGAATCCGAGGCCGAAGCTGCCGCCGCCGGTGGCCGCCGCGC
CCGCGCCATCCGGCCGGCCGGCGTCCGTGCTGCCGCACAAGACGGCCAACGTGCGGGACC
ACTACCGCATCGGGAAGAAGCTGGGGCAGGGGCAGTTCGGCACCACCTACCTGTGCGTGG
CCAAGGAGGACGGCGGCGAGTTCGCGTGCAAGTCCATCCCCAAGCGCAAGCTGCTGTGCC
GCGAGGACTACGAGGACGTCTGGCGCGAGATCCAGATCATGCACCACCTCTCCGAGCACC
CCAACGTCGTCCGCATCCGTGGCGCCTACGAGGACGCGCTCTTCGTGCACATTGTCATGG
AGCTCTGCGCGGGCGGTGAGCTCTTCGACCGCATCGTGGCCAAGGGGCACTACACCGAGC
GTGCCGCAGCGCAGCTCATCAGGACCATAGTTGGGGTCGTGGAGGCATGCCACTCGCTCG
GCGTCATGCACCGGGACCTCAAGCCGGAGAATTTCCTGTTTGCCAGCACTGCCGAGGACG
CCCCGCTCAAGACCACCGATTTTGGGCTATCCATGTTCTACAAGCCTGGTGACAAATTCT
CTGATGTTGTTGGGAGCCCCTACTATGTTGCACCTGAAGTGCTTCAGAAATGCTATGGTC
CAGAAGCTGATGTCTGGAGTGCTGGGGTGATTCTGTACATTTTGCTATGTGGTGTCCCCC
CTTTCTGGGCAGAAACTGAAGCAGGAATCTTCAGACAGATCCTTCGAGGCAAACTTGATT
TTGAGTCTGAGCCCTGGCCTAGTATCTCTGACAGCGCTAAAGATCTAGTCCGTACTATGC
TTTGCAGGGATCCTACAAAGCGGCTCTCTGCTCATGAGGTTCTCTGTCACCCATGGATTG
TTGATGATGCTGTGGCGCCTGATAAGCCTATTGATTCTGCTGTTTTATCAAGGCTGAAGC
ATTTTTCTGCAATGAACAAGCTCAAGAAGATGGCATTGAGGGTTATTGCTGAAAGCCTGT
CTGAGGAAGAGATTGGAGGTCTAAGGGAGCTGTTCAAAATGATTGATGCTGACAATAGTG
GAACTATAACATTTGATGAGCTGAAAGATGGCTTGAAAAGGGTGGGCTCAGAACTAACTG
AACATGAAATCCAGGCTTTAATGGATGCGGCGGACATCGACAACAGCGGAACGATTGATT
ATGGTGAATTCATCGCAGCTACATTGCACATGAACAAACTAGAGAGGGAGGAGAACTTGG
TGTCAGCATTCTCGTTTTTTGACAAGGATGGAAGTGGATTCATCACCATCGATGAGCTAT
CACATGCATGCCGGGAATTTGGTCTGGATGACGTTCACCTTGAGGATATGATCAAAGATG
TCGATCAGAACAATGACGGGCAAATCGATTACAGTGAGTTCACAGCGATGATGAGGAAGG
GCAATGCCGGCGCAACAGGGAGGCGGACCATGAGGAACAGCTTGAATCTGAATCTCGGCG
ACATCTTGAATCCCAGCAACAGCTAAGTTGGCATGGGGAGGAGAAATGCCATACCTGGTG
GATGCCAGTTTGTGAAAGTTTTTGCATGCCTGATCAGCTGGACTACTAATCTAAGAGGGG
AAGGGAGATAGATGGAGTCTCCTAGTAGTACTCAGTAGCTAGAGGGAGGAAATGGCGCAC
TCCTTTGGTTGTAACCGAATCTTAGACGCTGGATGGAGGTCACAATGCGATGAACTGCAT
GTGTATTCATGTGGTTGCAGGTTGTTGAACGCTGTTGGTAGCCGGGGATTACATCCGTAG
CACCTCAACTTGCTCCACTTCTGTTTACTGTCAACTGTTGGTGGTTTAAAGAATTTTCAG
ATGATGCTTGCTGGTCAAAAAAAAAAAAAAAAACTTATACAATAACGGTGTTTCCGTAAT
ATGAGCGGCCGCTCGAGCACTACCGATTGGGCCCAATTCGCC

Homology of Contig U35_16161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07040.1	514	protein\|CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi4g24390.1	519
Arabidopsis v10	AT1G35670.1	495	\| Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 \| calcium-dependent protein kinase 2 \| chr1:13205456-13208058 FORWARD LENGTH=495