barSeed - Barley Seed Development Database

Probe CUST_28174_PI390587928

Source Contig U35_30455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28174_PI390587928	Hv_44K_v2	ATCGGCAACCTCCCCGCGCTGCAGACGCTCTCGCTCGAGTCCAACAACTTTACCGGCGAG	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66232.1	4081	2e-24	1711 - 1770	100	60 / 60	plus	ABC10767 ABC39782
MLOC	MLOC_66232.2	3553	2e-24	1711 - 1770	100	60 / 60	plus	ABC10767 ABC39782
JLOC1	JLOC1_43628.1	3431	8e-25	1571 - 1630	100	60 / 60	plus
JLOC1	JLOC1_43629.1	2686	8e-25	1135 - 1194	100	60 / 60	minus
Harvest21	ABC30376	395	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_30455	395	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (395 bp)

>U35_30455 395 Hv_44K_v2
GGAACCTCGACGTCACCACCAACCACCTCACCGGCACCGTGCCGCCGGACCTCTGCGCGG
GCGGGAGGCTCGAGATGCTCGTGCTCATGGACAACGCCTTCTTCGGCCCCATCCCGGAGT
CGCTGGGCGCGTGCAAGACGCTGGTGCGCGTCCGCCTCAGCAAGAACTTCCTCAGCGGCG
CCGTGCCGGCCGGGCTCTTCGACCTGCCGCAGGCCAACATGCTCGAGCTCACCGACAACC
TGCTCACGGGCGGCCTCCCCGACGTGATCGGCGGCGGCAAGATCGGCATGCTGCTGCTGG
GGAATAACGGGATCGGCGGCAGGATTCCGCCGGCCATCGGCAACCTCCCCGCGCTGCAGA
CGCTCTCGCTCGAGTCCAACAACTTTACCGGCGAG

Homology of Contig U35_30455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g30160.1	995	3e-52
Arabidopsis v10	None