barSeed - Barley Seed Development Database

Probe CUST_2816_PI390587928

Source Contig U35_10855

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2816_PI390587928	Hv_44K_v2	TAAAGTTTTTAAGGATGCTCATGTACACGACACGAGCCAGTATGTTTGTCAAGAGCCCGG	1074	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377127	1523	2e-24	1017 - 1076	100	60 / 60	minus	ABC11460 ABC17787
MLOC	MLOC_29002.1	984	2e-24	610 - 669	100	60 / 60	plus	None
MLOC	MLOC_29002.4	1474	2e-24	498 - 557	100	60 / 60	plus	None
MLOC	MLOC_29002.3	1404	2e-24	565 - 624	100	60 / 60	plus	ABC11460
MLOC	MLOC_29002.2	1461	2e-24	565 - 624	100	60 / 60	plus	None
JLOC1	JLOC1_19365.1	1307	8e-25	676 - 735	100	60 / 60	minus
Harvest21	ABC22854	1240	3e-25	1075 - 1134	100	60 / 60	plus
Harvest35	U35_10855	1240	3e-25	1075 - 1134	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_10855 1240 Hv_44K_v2
GATCGACCCGGTCGCTAAATTACATTGCGCTCCGCTACTCCGAATTCCCTCCAGAGATCA
TGATAAACCTCATTTATCTGACGTTGCTGTAGGACATTGGAGTGAAGGACAACAGATTTT
GCTATCGCTATGTGGTTGTCTTCCAATATGGTTCTGTTGTGCTCTTTAATATTGCTGATC
ATGAAGCTGAGCACTATCTTGAGATGATCAGGAATCATGCTTCTGGATGGCTTCCAGAGA
TGAGGAAAGACGGTATGTTCATGCTATTAACGAGCTGATTGTTATTGTTTAAACGGCTAA
ATAGTGTAGTTTTCCTCATTGATTTGTATTTATCTTTCTTCTTTTCATTTCCATGTATGT
GCACGATCAATCCAATTTCCTTTGATGATAATGACTGCTGATATTTGATAAAGACCATTG
AGGATCAAGAGAATCACTCTGAATTTAATTTGTGTTTGATGTATTCCCTTTTATAGGACA
CACTGCTTTGGCTGAACCTTTGTAAGCCTACTGGAACTGGCCTTCTTAATTGTTTTCAAA
TACATTTTAAATTTACTATGAAACATGTAAAACGTTGTACAAGGCACAATGGATTATGTG
AGAAGTGCATGTTTAAACAGGCATATTCAGAAATCTGAGAAGTTTGAGTGAAGCCTCATT
TTCCAAGAGAGCAAATATCTAGAACGCTCTCTAATTACTTATACAATACAGTGCATATCA
TGTAACTGCACCTGCATAAGTATATAGGCACCCAATCATGCCCCCTGGCCAATAAAATTA
CAACGTTAATATGGCACCTAGCGCTTAATCCTCTTTTATAACCCTGAACCTCTATTATAT
TCTCACGTGATGAAATTTGTTTCAAAATTACCAGATTATGCAGTAGTAGAGAAGCCATCC
CTGACAACATGGATGAAAGGAGGTCTTGATTACATTCTACTTAGAAGTATAGACACTGAT
GGAATTCGGATCATTTCAAGTGTTCTTGGTCAAAGTATCGCTCTTGATCATTACATACAG
CAGGTATTGTGATTAAGCAAAGTCATCAAACTATTTCCATGTGGTTGCAAGGTTTAAAGT
TTTTAAGGATGCTCATGTACACGACACGAGCCAGTATGTTTGTCAAGAGCCCGGGTGTGG
GAAAGGTATATCGAACAAAAAAAGGATAGATTTAACATTACACCTTTACTGGTACATTAA
TGTTAGTGAACTTTCCTATNTACTAGCATTGACAGATTTT

Homology of Contig U35_10855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None