barSeed - Barley Seed Development Database

Probe CUST_28162_PI390587928

Source Contig U35_16168

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28162_PI390587928	Hv_44K_v2	AATGCTGGATTGCGGACTTTTGACCATTTTCATTTTCCGTCCTCTTGTGAGACATTTTTT	1253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249609.1	1380	2e-24	1270 - 1329	100	60 / 60	plus	ABC04877
MLOC	MLOC_21322.1	931	2e-24	154 - 213	100	60 / 60	minus	ABC04877
JLOC1	JLOC1_14800.1	1125	8e-25	912 - 971	100	60 / 60	plus
Harvest21	ABC04877	1418	3e-25	1254 - 1313	100	60 / 60	plus	ABC04877
Harvest35	U35_16168	1434	3e-25	1254 - 1313	100	60 / 60	plus

Contig Sequence (1434 bp)

>U35_16168 1434 Hv_44K_v2
GGCAGCCCATCCAACTCTCTCTTCCTCTCTCCTGAAGCCCGACCCGGCAGTTGACGTCCA
GCTCCAACAACACCGTTGATCCCCTCCTCCGGCGCCGGCGTCCTTTCTCGGCTATCGCCC
CCCGCGTCGCCCTCCACATCCACCTTGTTTTCTGCTCCGACGCAGCCATGAATTACATCA
TCGGCGCATTCAAGCCGCCCTGCGACATCTTCGTGACCTTTTCCGATGAGAGGTGCCGGA
AGCAGGTTGCAGTCAAGAAGGATAATGGGAAGACGGCGATGGTGCCGGCGTTCCAGAGCC
TGGAGACCATAGCCGGAGAGGTATCAATAGCGCCTGTTCCTGGTAAAAGGATTGAGCACA
TGGGTGTTAAGATTGAGCTGCTTGGTCAGATAGAGTTGTATTTCGACAGAGGCAACTTCT
ACGACTTCACTTCATTGGTGCGTGAGTTAGATGTTCCTGGTGAAATATATGAAAGAAAGA
CATATCCATTTGAGTTCTCTACTGTTGAAATGCCATATGAGTCATACAATGGAACAAATG
TCAGACTGAGGTACATCCTGAAAGTGACGATTGGTAGAAACTATGTTGGCAATATTGTGG
AATGTCGGGATTTCTGTGTAAGGAACTATTCTCCGCTTCCTTCGATCAATAACAGCATCA
AGATGGAAGTTGGAATTGAAGATTGTCTGCATATTGAGTTTGAGTACAGCAAAAGCAAGT
ACCATCTCAAGGATGTCATTGTAGGAAAGATCTATTTTCTTCTAGTCAGAATAAAGATAA
AAAACATGGAGCTTGAGATTCGCCGCCGGGAATCAACAGGATCAGGTCCTAACACATATG
TTGAGACTGAGACACTTGCTAAATTTGAGCTGATGGATGGTGCCCCAGTCAGAGGAGAAT
CTATTCCAGTAAGGCTGTTCTTGACTCCATACGAGCTAACCCCGACTTACCGCAACATAA
ACAACAAGTTCAGTGTCAAGTACTACCTCAACCTGGTCCTTGTGGACGAGGAAGACCGGA
GATACTTCAAGCAGCAAGAGATAAACATGTTCCGCCTTGACGAAATTCCACAGCCTTCAT
AGACTCCTGCTGCTCGGAACCTGGCCTGAATCGTGTGTTGCAAGAGTTAGCAATTTGGCA
TCCTGCTATGCTGTATATAACTCTCCAGGAGAGCATGCAGTGCAGTTCCAATGTACCGTG
CGCTGTCTGGTTACGCCTTTTCCATAGCAATCTGGTTTGGATACAATCACTGAAATGCTG
GATTGCGGACTTTTGACCATTTTCATTTTCCGTCCTCTTGTGAGACATTTTTTTTCCTCC
TTAGACGCTTGTCAAGCATCTTGAGATAACCAATTGTATTTGATATTTGCTTCAAAAAAA
AAAAAAAAAATGTTGTTTAGATCGTTCAGGCTATGGACGCTCAAGCCATTTTCA

Homology of Contig U35_16168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g41130.2	268	3e-176	protein\|vacuolar protein sorting-associated protein 26, putative, expressed
Brachypodium v1_2	Bradi4g12930.3	306	0.0
Arabidopsis v10	AT5G53530.1	302	2e-177	\| Symbols: VPS26A \| vacuolar protein sorting 26A \| chr5:21746275-21748156 REVERSE LENGTH=302