barSeed - Barley Seed Development Database

Probe ABC04877

Source Contig ABC04877

barSeed

Links

Affymetrix Source Sequence (1418 bp)

>ABC04877 1418
GGCAGCCCATCCAACTCTCTCTTCCTCTCTCCTGAAGCCCGACCCGGCAGTTGACGTCCA
GCTCCAACAACACCGTTGATCCCCTCCTCCGGCGCCGGCGTCCTTTCTCGGCTATCGCCC
CCCGCGTCGCCCTCCACATCCACCTTGTTTTCTGCTCCGACGCAGCCATGAATTACATCA
TCGGCGCATTCAAGCCGCCCTGCGACATCTTCGTGACCTTTTCCGATGAGAGGTGCCGGA
AGCAGGTTGCAGTCAAGAAGGATAATGGGAAGACGGCGATGGTGCCGGCGTTCCAGAGCC
TGGAGACCATAGCCGGAGAGGTATCAATAGCGCCTGTTCCTGGTAAAAGGATTGAGCACA
TGGGTGTTAAGATTGAGCTGCTTGGTCAGATAGAGTTGTATTTCGACAGAGGCAACTTCT
ACGACTTCACTTCATTGGTGCGTGAGTTAGATGTTCCTGGTGAAATATATGAAAGAAAGA
CATATCCATTTGAGTTCTCTACTGTTGAAATGCCATATGAGTCATACAATGGAACAAATG
TCAGACTGAGGTACATCCTGAAAGTGACGATTGGTAGAAACTATGTTGGCAATATTGTGG
AATGTCGGGATTTCTGTGTAAGGAACTATTCTCCGCTTCCTTCGATCAATAACAGCATCA
AGATGGAAGTTGGAATTGAAGATTGTCTGCATATTGAGTTTGAGTACAGCAAAAGCAAGT
ACCATCTCAAGGATGTCATTGTAGGAAAGATCTATTTTCTTCTAGTCAGAATAAAGATAA
AAAACATGGAGCTTGAGATTCGCCGCCGGGAATCAACAGGATCAGGTCCTAACACATATG
TTGAGACTGAGACACTTGCTAAATTTGAGCTGATGGATGGTGCCCCAGTCAGAGGAGAAT
CTATTCCAGTAAGGCTGTTCTTGACTCCATACGAGCTAACCCCGACTTACCGCAACATAA
ACAACAAGTTCAGTGTCAAGTACTACCTCAACCTGGTCCTTGTGGACGAGGAAGACCGGA
GATACTTCAAGCAGCAAGAGATAAACATGTTCCGCCTTGACGAAATTCCACAGCCTTCAT
AGACTCCTGCTGCTCGGAACCTGGCCTGAATCGTGTGTTGCAAGAGTTAGCAATTTGGCA
TCCTGCTATGCTGTATATAACTCTCCAGGAGAGCATGCAGTGCAGTTCCAATGTACCGTG
CGCTGTCTGGTTACGCCTTTTCCATAGCAATCTGGTTTGGATACAATCACTGAAATGCTG
GATTGCGGACTTTTGACCATTTTCATTTTCCGTCCTCTTGTGAGACATTTTTTTTCCTCC
TTAGACGCTTGTCAAGCATCTTGAGATAACCAATTGTATTTGATATTTGCTTCATGTTGT
TTAGATCGTTCAGGCTATGGACGCTCAAGCCATTTTCA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249609.1	1380	0.0	18 - 1380	100	1363 / 1363	CUST_28162_PI390587928	ABC04877
MLOC_21322.2	1196	0.0	1 - 638	100	638 / 638	None	ABC04877
MLOC_21322.1	931	5e-88	751 - 927	100	177 / 177	CUST_28162_PI390587928	ABC04877
MLOC_77971.5	662	0.0	80 - 471	100	392 / 392	None	ABC04877
MLOC_77971.4	2264	0.0	135 - 526	100	392 / 392	None	ABC04877 ABC38132
MLOC_77971.1	2185	0.0	139 - 530	100	392 / 392	None	ABC04877 ABC38132
MLOC_77971.2	1430	0.0	139 - 530	100	392 / 392	None	ABC04877
MLOC_77971.3	1607	0.0	139 - 530	100	392 / 392	None	ABC04877
MLOC_52739.1	400	7e-132	1 - 256	100	256 / 256	None	ABC04877
MLOC_52739.2	577	5e-118	216 - 446	100	231 / 231	None	ABC04877