barSeed - Barley Seed Development Database

Probe CUST_28141_PI390587928

Source Contig U35_30460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28141_PI390587928	Hv_44K_v2	AGAGCTTGTCAATGACCTTTACAATAATGGTCTACCATCAAACCTATCCGGTGGCCGCAA	357	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4684.1	2710	2e-24	1246 - 1305	100	60 / 60	minus	ABC01797 ABC01800 ABC01805 ABC18558
JLOC1	JLOC1_2949.1	2676	8e-25	1212 - 1271	100	60 / 60	minus
Harvest21	ABC30385	569	3e-25	358 - 417	100	60 / 60	plus
Harvest35	U35_30460	569	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_30460 569 Hv_44K_v2
GCACCATCCAGGACAGATAGAGGCAGCTGCTATCATGGAGCACATCTTGGAGGGAAGCTC
CTACATGAAGCTTGCAAAGAAGCTTGGCGATCTTGATCCGCTGATGAAGCCTAAGCAAGA
CCGGTACGCACTCCGGACATCCCCACAGTGGCTTGGACCACAAATCGAAGTTATTCGTGC
TGCCACCAAGTCAATTGAGCGTGAGATCAATTCCGTCAATGACAACCCGCTCATTGATGT
CTCCCGTGGCAAGGCGATTCACGGTGGAAACTTCCAAGGGACCCCTATTGGCGTGTCCAT
GGACAATACCCGCCTCGCAATCGCAGCCATTGGCAAGCTCATGTTTGCTCAATTCTCAGA
GCTTGTCAATGACCTTTACAATAATGGTCTACCATCAAACCTATCCGGTGGCCGCAACCC
AAGCTTGGACTACGGCTTCAAAGGCGCCGAGATCGCCATGGCCTCTTACTGCTCGGAGCT
GCAGTTCTTGGGCAACCCGGTGACCAATCACGTCCAGAGCGCCGAGCAACACACCCAGGA
CGTTAACTCTCTTGGTCTCATCTCCTCCA

Homology of Contig U35_30460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41650.2	558	1e-125	protein\|phenylalanine ammonia-lyase, putative, expressed
Brachypodium v1_2	Bradi3g47110.1	711	1e-125
Arabidopsis v10	AT2G37040.1	725	3e-116	\| Symbols: PAL1, ATPAL1 \| PHE ammonia lyase 1 \| chr2:15557602-15560237 REVERSE LENGTH=725