barSeed - Barley Seed Development Database

Probe CUST_28114_PI390587928

Source Contig U35_42446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28114_PI390587928	Hv_44K_v2	TGGCGGTGCCAGAATAATAAACCTATGATGTCAACTATAATTCCTCTCTAAATCTTACGG	51	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365159	2139	2e-24	1968 - 2027	100	60 / 60	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.1	1389	2e-24	221 - 280	100	60 / 60	minus	ABC21055 ABC38117
MLOC	MLOC_44794.2	2169	2e-24	158 - 217	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.3	1894	2e-24	13 - 72	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_44794.4	2103	2e-24	13 - 72	100	60 / 60	minus	ABC20479 ABC21055 ABC38117
JLOC1	JLOC1_29059.3	1944	8e-25	1684 - 1743	100	60 / 60	plus
JLOC1	JLOC1_29059.2	1912	8e-25	1652 - 1711	100	60 / 60	plus
JLOC1	JLOC1_29059.1	1924	8e-25	1664 - 1723	100	60 / 60	plus
Harvest21	ABC38117	596	3e-25	52 - 111	100	60 / 60	minus	ABC38117
Harvest35	U35_42446	596	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (596 bp)

>U35_42446 596 Hv_44K_v2
TTTTTTTTTTTTTTTTTATACAAGTAAAATTTGTCCATAAGTTCACAAATACCGTAAGAT
TTAGAGAGGAATTATAGTTGACATCATAGGTTTATTATTCTGGCACCGCCACTATGCAAA
CCCGACATCTCACCTCAGGACATTGGCGCATAGGGAAAACCAGCAGACTCGTTGAATCCA
GAATGTGGTTGTTGAGGGATCTAGCGCCGATCTTGATCGTTCGCTTCAGCTTACGATGGT
GACTTTAACTATTTACGAAGTATGGCCTATATGTAAAACTGCCTAAAACAAGCTTCAGCA
CATCTTGCAGATTCATGAATTTCAGGCGTCTCAGTTGACAGTCACTTCGCATACCATCAT
CCTGCTGGGATGCCCTTTTTCTTGGGGACATAAACTTGTGAAAAGTGGAGGTAACCAGCC
AGCCCGAGAACGCTGAGCGCAGCCAGAAGCCAGTAAAAGTAATCCAGATGGCCTCGATTT
AGATTGTCCGAGAACCAACTATCTCCACCGTCACTGGTTACCCGGTCGATCGCATACACC
AGAAAGCTACTGATGAAGCTCCCAATCCCAAATATGCTCAAGTACAAGGCAAGGCC

Homology of Contig U35_42446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None