barSeed - Barley Seed Development Database

Probe CUST_28073_PI390587928

Source Contig U35_13033

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28073_PI390587928	Hv_44K_v2	TAATGTAATTCACACTGTACTTTGCATATAGATGAATGAATAGCTTGCCGTCAGTTGGCG	1155	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.798	2.093	1.244	0.634	0.250	0.359
Raw	246.422	443.856	231.618	187.063	24.762	40.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC21667	1215	3e-25	1 - 60	100	60 / 60	minus	ABC21667
Harvest35	U35_13033	1215	3e-25	1156 - 1215	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_13033 1215 Hv_44K_v2
CGGCCACGATGGGCATGGCCCTGCATGGGAATCGTGGCTAGTGGCATGTGATATGCATGG
GTTGGTTGAGATCCAAGAGAGCCGGTCGTGCGGTCAGCTAGGGGCCCAACGGGCATGCGA
CGTGTTCCAACATTGCCAGCAAAAAAAAAGTGGTGTTTACTTCATTGTTCAACTTTAACA
CATTTATAAATACAAGTGCACTTTAGTTTACTGTATCTCTGTTGCTCAGGTTGGTTTCAG
TAATTTGGTGAAGCGGCATAAGGACCAGACGAGGCGCATTTGGGTAGCTGAGGCAACAGC
GAGCTCTACATATACTCTTTCCCATGAGATCTCAAAAAAATCGCATCTTAAGGAAGCTGC
AACACGTGCTGAGAAATGGGCTTCAAGTTCTTTTGATAAAATCCAGCAGCTAAAGGAAAG
GGTTTTATGCATAATTGGTGATAGCGGTGGCTGACGTACTATGGGATAATGAAGGCTGCT
GCTTTTGGAAGTAATGTAAGAAAATGTTCGAAGTTGTGCAGAGTTTACTCTCCACACTGG
ATGCCCATTGGTAGTGAAGCGATATCGGCGTAACAAAGATACCTATTTATTATGCTTATG
CACTTTACAGAGATTGTGAGGCAGAGCACTACAGATCAGCTGACACTTGTGGAACAAATG
CGATTACCCTCGACTGAGAAGCTCTTGTTGGATACTCAAGATGACAGCCACATGGATTGG
AATCAATATACATCAACCAGGAGACGAACATGACAGGAAAATCATGATTCAGGCTTTGAC
TGATGGTGCTCACGCCCACCTTGTTGCTGAATCTTTGGCTCCTCAGCTGGCAGCCAAGAT
TGCTTGCACCCTTCAACTTCAGCAGGTCTCCTTACGGACAATCTCTCTCGCGCATGAAGA
TGTCCGCTTCCAGGAACATCATCATCAGCAGCATAGCATGGAGATGTCGAACTGCAGTTA
GCAGCTTTTTTCAAGACACTAATCCGCAACATCATGCTGTTTATTGTATCCCCTGAAACA
GCAACGGCATTGCCCACAAAGGTGCTCATCAGGTTCTCAATTCTAGATTAGAACCTGTCC
TAGGTTGTACCCATTCAGCTCATAGCATTGGATCTTGCCCTTCTGCTTCATCCCCATAAC
TTCCAAATGGAGGGCTAATGTAATTCACACTGTACTTTGCATATAGATGAATGAATAGCT
TGCCGTCAGTTGGCG

Homology of Contig U35_13033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None