- Probe CUST_28048_PI390587928
- Source Contig U35_25025
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_28048_PI390587928 | Hv_44K_v2 | GTACTCAAGCACTTTGTGTGTACCAACTTATTTAATTTGATGGACCATGCATTCTGTTAA | 240 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.569 | 3.120 | 0.839 | 1.009 | 0.786 | 0.700 |
| Raw | 13.746 | 41.495 | 9.987 | 19.460 | 2.906 | 3.003 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_79526.1 | 3481 | 7e-23 | 121 - 180 | 98 | 59 / 60 | minus | ABC18976 ABC26649 |
| JLOC1 | JLOC1_52962.1 | 3478 | 4e-23 | 3261 - 3320 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_25025 | 315 | 3e-25 | 241 - 300 | 100 | 60 / 60 | plus |
Contig Sequence (315 bp)
>U35_25025 315 Hv_44K_v2 CCACGCGTCCGGTTATCTATCAGGGCTGCCGCTATAAGGAAGGAGGCAAATAGCCATCCC AAGCCCTTTGGCCTTTCAGACGGGAACGCACGTGTGGAAGCTTAAATAAAGGTGTCCAAG AAGAAGACGTGTTAGTTGCTCTGCTGCGTGGTACTATTTGGTTTTCAGTGAATCTTGTAT CCAATTTAGTTGCGTTGATTACTACTGTTAAGAATCAATTAAGTTCTTGCTGTCGTGTGT GTACTCAAGCACTTTGTGTGTACCAACTTATTTAATTTGATGGACCATGCATTCTGTTAA AAAAAAAAAAAAAAA
Homology of Contig U35_25025 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |