barSeed - Barley Seed Development Database

Probe CUST_2801_PI390587928

Source Contig U35_34813

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2801_PI390587928	Hv_44K_v2	CCATGATTAAAAAAGAAGGCACAGATGGTGAAGAAGCTAAGAGGGCATACATGGCTGCTA	358	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3335.2	3006	7e-23	534 - 593	98	59 / 60	minus	ABC08692 ABC14481
JLOC1	JLOC1_1997.1	2959	4e-23	2149 - 2208	98	59 / 60	plus
Harvest21	ABC14481	775	1e-23	34 - 93	98	59 / 60	plus	ABC14481
Harvest35	U35_34813	582	3e-25	359 - 418	100	60 / 60	plus

Contig Sequence (582 bp)

>U35_34813 582 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCTCGAAGATGCTCGAGCGGCCGCTGAACTACTCTGTAATA
TCAGTCGAGCATTGGCTGTGCTAGCATCTGCATCGGTATGATCCTAGTCTATCTGTAATT
TATATTAGCACATTGACTACTGACAGTAATAGTCGATGCTTACTTATATTGCAGTCTGTT
AGCAAGGAGCGTCAAGAGTTCCTGAGCCTTGTCAACCAGGAGGTACAGTGTGGACTCATG
AAATGGAATTAGAGGAACAATTATCCGTACTTCGTTCTTCTGTTATGTTGCATATGCTTG
TACTGTGGAGGTCTAATAGGACTTTCTTATTGTGGAATGCAGATAGGACTGTATAACTCC
ATGATTAAAAAAGAAGGCACAGATGGTGAAGAAGCTAAGAGGGCATACATGGCTGCTAGA
GAGGAGGCAGACGATGCTGATGAGGTTGCTCAATTTGCAGGGATCATGATGGCAAGGTCA
CTCCTGAGGAGGTAGCGGCGGCAGCAGCTTATCTCAAGGATACCATAGGGAAGGAAGGTG
TCCAAGAGCTCATCAGCAATCTTTCTAAAGACAAAGGTCCTT

Homology of Contig U35_34813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None