barSeed - Barley Seed Development Database

Probe CUST_279_PI415269222

Source Contig TA32937_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_279_PI415269222	Hv_44K_v2	AAAGCTAAGCTAGCTTGCTGAGGATACAAGGAAGCTCCCTCCCTCCCTCCCAGCAATGGC	43	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63724.2	1571	2e-24	1211 - 1270	100	60 / 60	minus	ABC03674 ABC03675 ABC36779
MLOC	MLOC_63724.3	1906	2e-24	1546 - 1605	100	60 / 60	minus	ABC03674 ABC03675 ABC36779
JLOC1	JLOC1_41774.2	1862	8e-25	301 - 360	100	60 / 60	plus
JLOC1	JLOC1_41774.1	2123	8e-25	227 - 286	100	60 / 60	plus
Harvest21	ABC03674	1330	3e-25	47 - 106	100	60 / 60	plus	ABC03674
Harvest35	U35_1070	1330	3e-25	47 - 106	100	60 / 60	plus
Harvest35	U35_37460	443	4e-24	45 - 102	100	58 / 58	plus

Contig Sequence (825 bp)

>TA32937_4513 825 Hv_44K_v2
CATTTCGAGTCTAGCTAGCTAGCTTTAGACACCATATCCCTCGAAAGCTAAGCTAGCTTG
CTGAGGATACAAGGAAGCTCCCTCCCTCCCTCCCAGCAATGGCCGCTGCCGGCGCTCTCT
TCTTCGTCTTCTCCTCCTTGTGCCTCCTCGCACGACAGGCCGCGGCCGGCGGCTACGGCG
GGTGGCAGAGCGCCCATGCCACCTTCTACGGCGGCGGCGACGCCTCCGGCACGATGGGCG
GGGCGTGCGGGTACGGTAACCTGTACAGCACTGGGTACGGCACGAACACGGCGGCGCTGA
GCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTGCGCTGCGACA
ACGCCGGCAGCTCGTGCCGGCCGGGGTCCATCATGGTGACCGCCACCAACTTCTGCCCGC
CCAACTACGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCGCGCCCCCACTTCG
ACATGGCCGAGCCGGCCTTCCTCCACATCGCGCAGTACCGCGCCGGCATCGTACCCGTCT
CCTACAGAAGGGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACT
CCTACTTCAACCTGGTGCTGGTGACCAACGTGGCCGGCGCCGGCGACGCGCGCTCCGTGT
CCATCAAAGGCACGCGCACCGGCTGGCAAGCCATGTCCCGCAACTGGGGCATGAACTGGC
AGAGCAACACCTTCCTGGGACGCCAGTGCCTCTCCTTTAAGGTCACCTCCAGGGACGNCG
NACCGTTACCAGCAACGCCGCCGCGCCCGGCGGCTGGCATTCCGC

Homology of Contig TA32937_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39990.1	247	3e-135	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi2g22290.1	252	5e-141
Arabidopsis v10	AT1G69530.3	275	1e-105	\| Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 \| expansin A1 \| chr1:26142034-26143200 FORWARD LENGTH=275