barSeed - Barley Seed Development Database

Probe CUST_27906_PI390587928

Source Contig U35_8230

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27906_PI390587928	Hv_44K_v2	ATGTGGTGATACCGTTGGCGTTTCGGCCGCTGGTGATGTCTTTGTTGCCTGCAACGAGTG	320	GeneList: plum2 MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.476	0.413	1.163	1.137	1.144	1.064
Raw	79.194	101.428	258.861	348.859	140.576	145.827

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354566	3543	7e-23	330 - 389	98	59 / 60	plus	ABC04451 ABC04452
MLOC	MLOC_64555.3	3772	7e-23	3353 - 3412	98	59 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_64555.1	3913	7e-23	3412 - 3471	98	59 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_64555.2	3569	7e-23	3391 - 3450	98	59 / 60	minus	ABC04451 ABC04452
JLOC1	JLOC1_42402.2	3612	4e-23	128 - 187	98	59 / 60	plus
JLOC1	JLOC1_42402.1	3800	4e-23	316 - 375	98	59 / 60	plus
Harvest35	U35_8230	447	3e-25	321 - 380	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_8230 447 Hv_44K_v2
ATTGCAGCAGCGAGCTCCGAGAGTAGTTCTTCTCCCTCTCGAGAGCCAGCTCGCGGGGGA
TCTGGGAATGGTGCCCATCTCCGCCGACTCCTCCTCCTCCTCCTCCCGCCGGATCTAGAG
CGGCCTTCCCGTGCCCCTCTCGACTGAAGCGAGCGAGAGGCCGCCGCCGGTGGGGCGTGT
GAAGGCGGGGAGATGGCCACCAACCGGGGGATGGTCGCCGGGTCGCACAAACGCAACGAG
TTCGTCATGATCCGCAACGACGGCGACGCGCCCGCCCCGGGTAAGGAGGTGAAAGGCGCG
GGTGGTCAGGCCTGCCAGATATGTGGTGATACCGTTGGCGTTTCGGCCGCTGGTGATGTC
TTTGTTGCCTGCAACGAGTGCGCCTTCCCAGTCTGCCGCCCTTGCTACGAGTACGAGCGC
AAGGATGGGGTCCAATGCTGTCCTCAG

Homology of Contig U35_8230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None