barSeed - Barley Seed Development Database

Probe CUST_278_PI415269222

Source Contig TA57245_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_278_PI415269222	Hv_44K_v2	ATCAACGATCCGGCCAAGTACAACCTCGTCGACCCCGTCGAACGGAACACCGTCAGCGTG	541	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.746	2.831	0.932	0.273	0.742	0.826
Raw	30.796	50.070	14.400	3.480	4.488	6.954

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75304.1	2008	2e-24	1579 - 1638	100	60 / 60	plus	ABC18136 ABC18746
JLOC1	JLOC1_50227.1	2101	8e-25	1561 - 1620	100	60 / 60	plus
Harvest21	ABC18746	1011	3e-25	411 - 470	100	60 / 60	minus	ABC18746
Harvest35	U35_23659	1011	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (677 bp)

>TA57245_4513 677 Hv_44K_v2
CCCGACGCCGCCGAGCTCCACCCACAACCTCCCCCTGCCGGCTCTGCCGCGGTACAACGA
CACCAGCGCCGTGGCCAGCTTCACGAGCAACTTCCGGAGCCTCGCCAGCGCGCAGTACCC
GGCGCGCGTGCCGCAGGCGGTGGACCGGCGCGTCCTGTTCACCGTCGGCCTCGGCACCGA
CCCCTGCCCGTCCAACCAGACCTGCCAGGGCCCCAACGGCACCAAGTTCGCCGCGTCCAT
CAACAACAACTCCTTCGTCCGGCCCAGGAGCGCCCTCCTCGAGGCGCACTACCAGCGCCG
CTACGCCGGCGTGCTCATGGCCAACTTCCCGACCACGCCGCCGCACCCGTTCAACTACAC
CGGCGCCCCGCCCAACAACACGTTCGTCGCGCACGGCACGAGGGTGGTGCCGGTCAAGTT
CAACACCTCGGTGGAACTGGTGATGCAGGGCACCGCCATCCAGGGCGCCGAGAGCCACCC
CCTGCACATGCACGGCTTCAACTTCTTCGTGGTAGGCCAAGGGTTCGGCAACTACGACCC
CATCAACGATCCGGCCAAGTACAACCTCGTCGACCCCGTCGAACGGAACACCGTCAGCGT
GCCCACCGCCGGCTGGGTCGCCGTGCGGTTCCTCGCCGACAACCCANGTGTGTGGCTTAT
GCACTGCCACTTCGACC

Homology of Contig TA57245_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38390.1	514	5e-101	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g54740.1	577	3e-139
Arabidopsis v10	AT2G29130.1	573	6e-85	\| Symbols: LAC2, ATLAC2 \| laccase 2 \| chr2:12525189-12527699 REVERSE LENGTH=573