barSeed - Barley Seed Development Database

Probe CUST_27890_PI390587928

Source Contig U35_8246

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27890_PI390587928	Hv_44K_v2	ACTGATGAGTCTGAGGTAGTGGGTTACTTATGTAGTACTTATGTGATAATAGTTGTTCCT	750	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66367.2	2279	2e-24	2176 - 2235	100	60 / 60	plus	ABC16874
MLOC	MLOC_66367.1	1602	2e-24	1457 - 1516	100	60 / 60	plus	ABC16874
JLOC1	JLOC1_43723.3	2171	8e-25	1908 - 1967	100	60 / 60	plus
JLOC1	JLOC1_43723.2	922	8e-25	659 - 718	100	60 / 60	plus
JLOC1	JLOC1_43723.1	1726	8e-25	1463 - 1522	100	60 / 60	plus
Harvest21	ABC16874	813	3e-25	751 - 810	100	60 / 60	plus	ABC16874
Harvest35	U35_8246	813	3e-25	751 - 810	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_8246 813 Hv_44K_v2
GCTCTGCTCCGCCCTGCGCTCGCGTGCCCTCCTCCTCCCCCTGACCCCGCCGCCTCGTAC
GCGTACGGCCACCCTTCGCCGCCACACTTGGCCGCGGGCCACCTCCTCCTTGTCATCTCC
GCCGCCGCCGGAGATGGAGGCCTCGACGTACAAGTTCGGGCCCTACAGGATCGACGCGAG
GGAGGTCTTCCACGCCACGCCCCTCTCCTACGCCATGGTCAACCTACGCCCCCTCCTCCC
TGGTCATGTCCTTGTGTGCCCCAAGCGTGAAGTGAAACGCTTTACTGATCTAAGCACTGG
CGAGACAAGTGATTTATGGGTCACTGCAAAGGAAGTTGGTGTACGGCTTGAGCAGTACCA
CAAAGCTTCTTCGCTTACATTTGCAATTCAGGATGGTCCTCAAGCTGGCCAAACAGTTCC
GCATGTCCACATCCATGTGATCCCCAGGAGGAAGGGAGATTTTGAAAATAATGATGAAAT
ATATGACGCGATTGATGTGAAAGAAAAAGAATTGAAGGAAAAGCTCGATCTGGATGTTCA
AAGAAAAGATAGGACCATGGAAGAAATGAGTCATGAAGCTAACGAGTACCGTGCTCTTTT
CTCCTAGATGTATTTCTTACAAACTGTTTTCTAATTTTTCACTCAGTGTTTTCACTGAAA
TAGACTTCTGGACTGTTTGTTCTGCATTGTTTTTCGAGAGTGTAGCAATGGATATTTTAT
TTTCCACTGACCTGGTGATGTCGAGTCTTAACTGATGAGTCTGAGGTAGTGGGTTACTTA
TGTAGTACTTATGTGATAATAGTTGTTCCTCTC

Homology of Contig U35_8246 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02730.1	207	1e-81	protein\|histidine triad family protein, putative, expressed
Brachypodium v1_2	Bradi4g44190.1	153	1e-76
Arabidopsis v10	AT5G58240.1	180	6e-69	\| Symbols: FHIT \| FRAGILE HISTIDINE TRIAD \| chr5:23558349-23559313 REVERSE LENGTH=180