barSeed - Barley Seed Development Database

Probe CUST_27801_PI390587928

Source Contig U35_12843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27801_PI390587928	Hv_44K_v2	ATACCGGCCATCGGCATGCTGGTCTCCATCGTGGTGTTCGTGATCGGGTACCCGCTCTAC	100	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355198	2276	2e-24	789 - 848	100	60 / 60	plus	ABC21251 ABC29300
MLOC	MLOC_10689.1	3075	2e-24	1762 - 1821	100	60 / 60	minus	ABC21251 ABC29300
MLOC	MLOC_10689.2	2133	2e-24	1417 - 1476	100	60 / 60	minus	ABC21251 ABC29300
MLOC	MLOC_10689.3	2383	2e-24	1668 - 1727	100	60 / 60	minus	ABC21251 ABC29300
JLOC1	JLOC1_7009.2	2274	8e-25	660 - 719	100	60 / 60	plus
JLOC1	JLOC1_7009.1	2534	8e-25	660 - 719	100	60 / 60	plus
Harvest35	U35_12843	731	3e-25	101 - 160	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_12843 731 Hv_44K_v2
CTTCAACCTCTACTTCTTCACCATGGGGTTGGCCGTGCTGCTGGCGCTGACGGTGGTGGT
GTACATCCAGGAGAACGTGGGGTGGGGATGGGGGTTCGGGATACCGGCCATCGGCATGCT
GGTCTCCATCGTGGTGTTCGTGATCGGGTACCCGCTCTACGTCCGGCTCAAGCCGGGGGG
CAGCCCGTTCACGCGGCTGGCGCAGGTCGTCGCCGCCGCCTACAAGAAGCGCCGCGCCGC
GCTGCCGGAGGACCCCCGCATGCTCTACCACGACAAGGAGCTCGACGCGCTCATCTCCAC
CAACGGCAGGCTCCTGCACACCAACCAGCTCACGTTCTTGGACCGGGCGGCGATCGTGAT
GGCGGGGGACACCGCCGGGTCCGGCAAGCTGGACCTGTGGCGGCTGTCGACGGTGCACCG
CGTGGAGGAGCTCAAGTCCATCGTCCGCATGCTGCCCATCTGGTCGGCCGGCATCCTGCT
CGTCACCGCCGGCTCGCACAACAGCAGCTTCACCATCCAGCAGGCGCGCACCATGGACCG
CCATGTGACCCAGCATTTCCAGATCCCGCCGGCCACCATGTCCATCTTCACCACCACCGC
GATGCTCGTCACCCTGGGCCTCTACGACCGCGCCGTCGTGCCCCTGGCGCGCCGCTTCAC
GGGCCTACCGTCCGGGATCACCTACTTCCAGCGCATGGCCGTCGGGCTGGCCATCTCCAT
CCTCGGCGTCG

Homology of Contig U35_12843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33960.1	605	3e-124	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi2g25460.1	602	1e-123
Arabidopsis v10	AT1G68570.1	596	2e-74	Major facilitator superfamily protein \| chr1:25746811-25750110 FORWARD LENGTH=596