barSeed - Barley Seed Development Database

Probe CUST_27786_PI390587928

Source Contig U35_24828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27786_PI390587928	Hv_44K_v2	TTGATTTAGCCATCCAGAGCTCAGGGAAGGGGAGCTAGCTGAGCCGTACAGAAATGGCGG	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61206.1	2443	2e-24	2132 - 2191	100	60 / 60	minus	ABC18447 ABC18746 ABC46355
JLOC1	JLOC1_39995.1	2407	8e-25	166 - 225	100	60 / 60	plus
Harvest35	U35_24828	462	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (462 bp)

>U35_24828 462 Hv_44K_v2
ATGCAGCAGAGCCATTGATTTAGCCATCCAGAGCTCAGGGAAGGGGAGCTAGCTGAGCCG
TACAGAAATGGCGGCCATCCTCGTCGCCGCCGTGATGGTAGTGGTGCTGTCCGTCAACGC
GGCGGAGAGCTCCACGGTGGAGTACCAGTTCGATGTGGCGACGATGAACGTGACGCGGCT
GTGCGGCAGCAAGAGCATCGTGGCGGTGAACGGGCAGTTCCCAGGCCCCACGGTGTCGGC
GAGGGAGGGCGACCTCGTCGTCGTCCGGGTCGTCAACAAGGCCCAGTACAACATGAGCAT
CCACTGGCACGGCGTCCGGCAGATCCGGAGCGGGTGGGCGGACGGGCCGGCGTACATCAT
GCAGTGCCCGATCCAGCCGGGCCAGAGCTACGTCTACAAGTTCACGGTGACCGGGCAGCG
CGGCACGCTGTGGTGGCACGCGCACATCTCCTGGCTCCGCGC

Homology of Contig U35_24828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62490.1	578	7e-63	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g54690.1	579	1e-69
Arabidopsis v10	AT5G03260.1	557	4e-54	\| Symbols: LAC11 \| laccase 11 \| chr5:777198-779338 REVERSE LENGTH=557