barSeed - Barley Seed Development Database

Probe CUST_27763_PI390587928

Source Contig U35_24835

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27763_PI390587928	Hv_44K_v2	TACAGTAAAAGATATAACTTCAATATGGGGCACGTTTGCCTCGAATGGCAGCTCGGTTCC	380	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38791.1	1315	7e-23	790 - 849	98	59 / 60	minus	ABC44874
JLOC1	JLOC1_25254.1	1302	4e-23	430 - 489	98	59 / 60	plus
Harvest21	ABC18747	629	3e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_24835	629	3e-25	381 - 440	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_24835 629 Hv_44K_v2
GGCAACACTTCTATTCTTAAGCCGCGAAATCTAAAATGGGGAGTATCATTTCCATGGCTC
TCCTCTTCGTCTTTGGAGTCCTGTTGCTCAACGCCGATCTCGGGTCATGTGGCTGCTTTA
AGCGCATCTTCGCCTTCGGCGACTCCATTATCGACACGGGCAACTTTCGTTCAGGTTCAA
TGTGGAAGCCCCCTTATGGAGGAACCTACTTCCACCATCCCACGGGCCGCTGCTCCGACG
GGCGACTCATTGTGGACTTCTACGCGCAAGCGTTGGGCCTGCCACTCCTGCCGCCGAGTG
GGCCCGAGGAGAAGACGGGGCAATTCCCCACCGGTGCCAACTTCGCCGTGTCAGGCTCTG
TTGCCCTGTGCCCGGACTACTACAGTAAAAGATATAACTTCAATATGGGGCACGTTTGCC
TCGAATGGCAGCTCGGTTCCTTCAAGGCAGTGCTCGCACGGATAGCTCCTGGAAAAGCTG
CCACCAAGAGTCTCCTTAGAGAGTCCCTCATCGTCTTTGGCGAGATCGGCGGCAACGACT
ATAACTTCTGGTTCTACGATCGTGATCGCAGCCGTGACACACCGTATGAGTTCATGCCGG
ATGTGATCTCCCGCATTGGCTCCGGCGTC

Homology of Contig U35_24835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46210.1	381	3e-64	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g45230.1	368	3e-77
Arabidopsis v10	None