barSeed - Barley Seed Development Database

Probe CUST_27728_PI390587928

Source Contig U35_36828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27728_PI390587928	Hv_44K_v2	TAAAGAGTACCAATCAAGGGGTTTAACATTGGATGTGGAAGCTGCTTTGCCACCATCAAA	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376402	3395	2e-24	1715 - 1774	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.11	4904	2e-24	1260 - 1319	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.6	2418	2e-24	1260 - 1319	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.8	3786	2e-24	1260 - 1319	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.9	2952	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.10	2959	2e-24	1260 - 1319	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.3	2418	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.4	2201	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.7	2722	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.2	2774	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.12	5459	2e-24	1260 - 1319	100	60 / 60	plus	ABC05377 ABC38116
MLOC	MLOC_5141.5	2238	2e-24	1260 - 1319	100	60 / 60	plus	ABC38116
MLOC	MLOC_5141.1	4158	2e-24	1261 - 1320	100	60 / 60	plus	ABC05377 ABC38116
JLOC1	JLOC1_3286.11	4463	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_3286.10	4824	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_3286.9	4610	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_3286.8	4285	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_3286.7	5076	8e-25	1260 - 1319	100	60 / 60	plus
JLOC1	JLOC1_3286.6	3937	8e-25	1261 - 1320	100	60 / 60	plus
JLOC1	JLOC1_3286.5	4161	8e-25	1261 - 1320	100	60 / 60	plus
JLOC1	JLOC1_3286.4	4305	8e-25	1261 - 1320	100	60 / 60	plus
JLOC1	JLOC1_3286.3	5291	8e-25	1261 - 1320	100	60 / 60	plus
JLOC1	JLOC1_3286.2	4825	8e-25	1261 - 1320	100	60 / 60	plus
JLOC1	JLOC1_3286.1	4841	8e-25	1261 - 1320	100	60 / 60	plus
Harvest21	ABC32231	694	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_36828	694	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_36828 694 Hv_44K_v2
GCCCCCCTTTCTATGCTGGATGAGGTTTGTGTGCATTCAAGTGTAGGTACCTTCAATCAA
CCTGGAACTCCTGGGGCTAGTGACTGCAATAAAAAATTGTATTCTACTGCTAAGGTAGAT
AATACCTGTGACAGCGAAGCATCTCAAAATGGAGCTTCAGCGATAGAATTAAAATCAAAT
GGTGCATCAACTTTTCCCATGAAATCAACAGTAATTTTCAAGAGAAAAAGGAAGCCAAAT
AGAAATTGGATCCCTCATGCTACAGATTGTATGACACCCAATAAGGACGAGGAATTCCAG
GTTGAGTTGAGTGGAAGACTCACAGACTCTCCAAATTCAAAGAATGAATTTAATAAGTTA
GACAGAGATGACCACTTGCCGTTGGTCAAAAGAGCAAGGGTTCGAATGGGAAGGCCTCTG
TCAGTGGCTTCACCAAAGACAGTTGGGCAGATTGATGTTCCTAATAATATATCAGGGTTT
GTTGCACCTGCTGAGCACTCTGTTATGCATATCGGCAATGCTTCTTCCGCTGCTCAGTCA
TCCATATTAAACATGCCTGTCCTGCCAGGGGATGGTAACTCTGTCTGGAAGAATAAAGAG
TACCAATCAAGGGGTTTAACATTGGATGTGGAAGCTGCTTTGCCACCATCAAAACGCCTN
CATCGTGCTTTAGAAGCTATGTCTGCTAATGCTG

Homology of Contig U35_36828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24339.1	1494	7e-71	protein\|PWWP domain containing protein, expressed
Brachypodium v1_2	Bradi1g61937.2	1431	2e-85
Arabidopsis v10	None