barSeed - Barley Seed Development Database

Probe CUST_27723_PI390587928

Source Contig U35_12872

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27723_PI390587928	Hv_44K_v2	ACTACCTGCATTGCACCTTGGCTAGCCCTAGCCATGGAGAACTTCAACGTCCCGAACGGA	31	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.071	0.201	1.420	2.015	1.093	1.220
Raw	3.336	22.593	141.079	304.370	60.625	73.416

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60891.3	3324	2e-24	2277 - 2336	100	60 / 60	minus	ABC21004 ABC24430
MLOC	MLOC_60891.1	3613	2e-24	2566 - 2625	100	60 / 60	minus	ABC21004 ABC24430
MLOC	MLOC_60891.2	1905	2e-24	1814 - 1873	100	60 / 60	minus	ABC21004
JLOC1	JLOC1_39743.1	3447	8e-25	2433 - 2492	100	60 / 60	minus
Harvest21	ABC24946	523	3e-25	32 - 91	100	60 / 60	plus
Harvest35	U35_12872	523	3e-25	32 - 91	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_12872 523 Hv_44K_v2
CTCAATCGGCAAAGCCCTAAAGCCAAGCGCGACTACCTGCATTGCACCTTGGCTAGCCCT
AGCCATGGAGAACTTCAACGTCCCGAACGGAGCAGCGGCGCCGGCGCCAACTCAGGCGAC
GCCGGTGGTGCGGGAGCAGGACCGGCTGATGCCGATCGCGAACGTGATCCGCATCATGCG
CCGTGCGCTCCCTGCCCACGCCAAGATCTCCGACGACGCCAAGGAGGCGATCCAGGAGTG
CGTGTCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCAACGAGCGGTGCCACATGGAGCA
CCGCAAGACCGTCAACGCGGAAGACATCGTGTGGGCCCTGAACCGCCTCGGCTTCGACGA
CTACGTCCTGCCCCTCAGCGTCTTCCTGCACCGCATGCGCGAGGGCGAGGCGGGGACAGG
TGGTGCCGGTGCAGGCGACAACCGCGCCGCCACGAGGGCGCCTCCCCGCGCGCCGCCGAC
CGCTCTCCACGCCGTGCCGGTGCAGGTACTGCAGCGTCCCATG

Homology of Contig U35_12872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None