barSeed - Barley Seed Development Database

Probe CUST_27690_PI390587928

Source Contig U35_932

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27690_PI390587928	Hv_44K_v2	CCTGTTAAAAACGTTTTTTAAGCTGAACGTTTTTATATTACGGGATGGAGGGGTTTGTAA	1448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16458.1	1443	3e-21	18 - 77	97	58 / 60	minus	ABC02384 ABC43764
JLOC1	JLOC1_11329.1	1397	2e-21	1321 - 1380	97	58 / 60	plus
Harvest21	ABC43764	425	3e-25	16 - 75	100	60 / 60	minus	ABC43764
Harvest35	U35_932	1523	3e-25	1449 - 1508	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_932 1523 Hv_44K_v2
GCATCTCGGTGACCTCACCGCTACAGTGCACTGGTGGCGGCGGCGGGCAGGGGAGGGAAG
ATGGCACCGCCGCGGCGCGTGTGCGTCACCGGCGGCGGCGGGTTCATCGCCTCGTGGCTC
GTCAAGCTGCTCCTCTCCCGCGGCTACGCCGTCAACGCCACCGTCCGCGACCCAAGTGAC
CCCAAGAATGTCCACCTCAAGCAGATGGACGAGGCCCGGGAGAATCTGCACTTGTTCAGG
GCCGACGTGCTCGACTACGACACGCTGACACGTGCGTTTGAGGGGTGTGAGGGGGTCTTC
CACCTCGCCACTCCGGTGCCTGAAGATAAGATTGTTGATCCTGAGTCAGAAGTATTGGCT
CCTGCTGTGAAAGGTACTTCAAATGTGCTAAAGGCTTGCTCGGCTATGAAGGTTCAGAAG
GTTATTGTCTTGTCATCCACTGCTGCAGTTGATTTCAACCCGAATTGGCCTCAAGATAAA
CTTAAAGATGAGAGTTGCTGGTCAGACAAAGACTTCTGCCAGAAGAACGAGGACTGGTAT
TCTGTTGCTAAGATTGTGGCCGAACAGGCATCCTTTGAATATTCGGAGAAGAATGGATTA
AATGTTGTTACGGTTTGCCCTCCTTTGGTTTTTGGTCCATTGTTGCAGCCTACTGTGAAT
ACAAGTAGCAAATTCTTAATCTACGTTACTAACGGAGGCCCTGACGTGATGAGCAACAAG
CTGTGGCACATTGTAGACGTCCGCGATGTGGCTGACGCCTTGCTGCTTGTGTACGAGAAG
GCAGAATCGTATGGGAGATACATCTGCACGCCGAACAACATCTGCACAACGGACTTGGTG
GACTTGCTGAAGAAGATGCACCCACAGTACAGCTATGTGAACAACATCGTCGACGTGGAC
CGTAAGGCGCCGATATCGTCGCAGAAGCTGAAGGATCTGGGGTGGAAGCCGCGGAAGCTG
GAGGAGACGCTCTCGGACAGCGTGGACTGTTATGAGAAGGCTGGACTTCTGCAGGGTTCC
GCTGCGCGTCCTTGCCGGCTTCCGCATCTGTTCCGTCTGGCTGGTGATCAGTGAATCAGA
AGTGCTGACGGTGCTTCGTTTTTTATGGTCGGACTTCTGGATGGAGTCTCGCAACGGCAA
CAAATAAGCAGCTATCGCTCTGCAGCTCTGTATCTGCCGTATCCCTGCTGTACCTGCCGG
CACCCCGTCTGTCACCTCTAAGAATGGACAGAGGGTACAACATGCAGAGCACAAGCGGAA
TGCCGATGCATATAAACTGTCAAAAGAGACAAGGTACTCTGCCACTTACTGGCTGTCACG
GTTAGTGGAGGGAGATTTCCTTCCGTTTTCCTAATCGCTAGCCTTTTGCTGCGATGAGCT
AAAAGGCTGTATTAGTACCATCAGGCAGCGCTACAGCTAGATTAGAAGAATCGCAATGAA
ATACGCTCCCTGTTAAAAACGTTTTTTAAGCTGAACGTTTTTATATTACGGGATGGAGGG
GTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31502.1	349	1e-156	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g33902.2	338	0.0
Arabidopsis v10	AT2G33590.1	321	8e-109	NAD(P)-binding Rossmann-fold superfamily protein \| chr2:14224622-14226365 FORWARD LENGTH=321