barSeed - Barley Seed Development Database

Probe CUST_27667_PI390587928

Source Contig U35_955

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27667_PI390587928	Hv_44K_v2	AAACTCTCTGCAACACCTTTCAGTTGTGGTTGATTTATCGAATCATGTTATCAGATAATG	687	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38134.3	2284	2e-24	1175 - 1234	100	60 / 60	plus	ABC01124 ABC02841 ABC05257 ABC47224
MLOC	MLOC_38134.2	1872	2e-24	1175 - 1234	100	60 / 60	plus	ABC02841 ABC05257
MLOC	MLOC_38134.4	2383	2e-24	1175 - 1234	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01136 ABC01143 ABC01146 ABC01147 ABC01154 ABC01157 ABC01161 ABC01166 ABC01177 ABC02841 ABC05257 ABC31601 ABC31617 ABC37479 ABC47224 ABC49951
JLOC1	JLOC1_24773.1	1590	8e-25	1175 - 1234	100	60 / 60	plus
Harvest21	ABC02841	796	3e-25	688 - 747	100	60 / 60	plus	ABC02841
Harvest35	U35_955	796	3e-25	688 - 747	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_955 796 Hv_44K_v2
CTCGGCTGGATTCCATCTCCCCACTCGGCCACTCCCCACCCCACCCCACCCCGTCGCCGC
CGGATCCATTGCGCTGCGGCGAGGACGGCCACGAGGCGATCCCCGCCCTGCGCAGGGGCA
CGATGGCTGACCATGACCCAGAGTTGGAGGCCATCAGGCAGAGGCGAATGCAAGAGATAA
TGGGACAGCGTGGTGCGCCAAGCCAACAAAATGCAGGGCAACAAAAGGCCCAGGAGGAAG
CAAAGCAGGAAGCTGAGGAACGCAGGCAGATGATGCTTGCTCAGATACTGTCTTCTGAAG
CTAGAGAGAGGCTCTCCCGCATAGCTTTGGTCAAGCCTGATAAAGCAAGAGGAGTGGAGG
ATGTTCTGCTGAGAGCTGCACAAACTGGTGGAATATCTGAAAAGGTTTCTGAAGAAAGGC
TTATCTCACTTCTGGAGCAAATCAACACCCACACAAGCAAACAAACCAAAGTGACGATTC
AGAGGCGTCGCAACGTCCTTGACGACGATGACTAGTTGGTAAACTTGATGTAGACTATGC
TGGAGCGAATGGGTGGCAGCTGTGTATGCTTGATTCAACAACCGTTCAAACCTGACAAAC
TATTTGATTGATCTTTGGGTTGTATATGATCTGGATATTATTTGAGGGTTTTATTGGTAA
CAGTTGCATGCGTTGCTTCTACCCCTGAAACTCTCTGCAACACCTTTCAGTTGTGGTTGA
TTTATCGAATCATGTTATCAGATAATGTTAATCTGAATGAATTCATCCTGTTCGATGTGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g47446.1	129	4e-51	protein\|expressed protein
Brachypodium v1_2	Bradi2g17790.1	129	6e-53
Arabidopsis v10	None