- Probe CUST_27648_PI390587928
- Source Contig U35_19532
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27648_PI390587928 | Hv_44K_v2 | GCCCCATGGATATTGGACCTAAAGCTGATAATGACACAGACGGTATAAGGAATGAAGTGT | 454 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.280 | 0.275 | 0.828 | 1.636 | 1.385 | 1.940 |
| Raw | 4.967 | 7.891 | 26.516 | 78.638 | 24.716 | 36.232 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70044.5 | 2653 | 2e-24 | 520 - 579 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.1 | 3087 | 2e-24 | 526 - 585 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.6 | 3028 | 2e-24 | 516 - 575 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.2 | 3160 | 2e-24 | 526 - 585 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.3 | 3084 | 2e-24 | 523 - 582 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.4 | 2630 | 2e-24 | 523 - 582 | 100 | 60 / 60 | minus | ABC11831 |
| JLOC1 | JLOC1_46451.7 | 2943 | 8e-25 | 2362 - 2421 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.6 | 2807 | 8e-25 | 2223 - 2282 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.5 | 2804 | 8e-25 | 2223 - 2282 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.4 | 2777 | 8e-25 | 2193 - 2252 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.3 | 2765 | 8e-25 | 2181 - 2240 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.2 | 2741 | 8e-25 | 2160 - 2219 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.1 | 2661 | 8e-25 | 2080 - 2139 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19532 | 517 | 3e-25 | 455 - 514 | 100 | 60 / 60 | plus |
Contig Sequence (517 bp)
>U35_19532 517 Hv_44K_v2 TCGAGCTTTGTTGGCCTACTGAAACTTGTCGAAGGAGTTATTCAGAGATCGTCAAAGGAT TACAGTAGCAACCTTGTGCAATCTGGTGGCAACATGGGTGATCAATCTACACTGATAACT GGTTATTTCGCTCATGCATTCTTATGGAAAACATCGGAACTTACTTGTGTACTGCGACAC TTCATTGTCGTATGCAATGAGCTTCTGTATGGGAACACTGATGTCGAAAGATTTGTTCTT GAAGTGAGCCTCACACTAGATTGGATACTGAACCACTGCTTTTCACTACAAGATGTATCA GAGATGAGGGAAACTATCATAAAGCATTTGGATTTAGATAGCAGTGATGGGCATGAAGCT GTTGCAGCCAAACAAATAGGAGTCCAAACCATAAATGGCATAGATGAACCCAGCACTCCA AACAGCGTGCAGATGTCACTAGTTTGTGTATCAAGCCCCATGGATATTGGACCTAAAGCT GATAATGACACAGACGGTATAAGGAATGAAGTGTCAT
Homology of Contig U35_19532 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g55570.1 | 917 | 5e-67 | protein|plant protein of unknown function DUF869 domain containing protein, expressed |
| Brachypodium v1_2 | Bradi5g24090.2 | 909 | 2e-76 | |
| Arabidopsis v10 | None |