- Probe CUST_27637_PI390587928
- Source Contig U35_45805
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27637_PI390587928 | Hv_44K_v2 | CGCGTATTGTAATAAACTAATAATTTTAGGGGATGTTGTCGACTAGATAATATAGTGGGG | 28 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.732 | 0.605 | 0.559 | 1.993 | 1.781 | 1.695 |
| Raw | 4.318 | 4.075 | 5.549 | 30.636 | 9.977 | 10.784 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61496.1 | 1279 | 7e-23 | 38 - 97 | 98 | 59 / 60 | minus | ABC03024 ABC03026 ABC45116 |
| JLOC1 | JLOC1_40188.1 | 1360 | 4e-23 | 1242 - 1301 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC45116 | 423 | 3e-25 | 29 - 88 | 100 | 60 / 60 | minus | ABC45116 |
| Harvest35 | U35_45805 | 423 | 3e-25 | 29 - 88 | 100 | 60 / 60 | minus |
Contig Sequence (423 bp)
>U35_45805 423 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAAAAACGTCACCCCACTATATTATCTAGTCGACAACATCCCC TAAAATTATTAGTTTATTACAATACGCGTAGCCATCAGTAGCTCAATGCAAAATAGCGGG CACACAGTAGGGCCCTGTGAGCCACCCATACCCAATCGAACGGTAGGCAGCCTCAGTCAA GGGGATGCCGTCCCAGTTCAAGTAGTTCTCCGGGTCCTTGCAGGCGCTCGAGCCGGGCAT TCCACACCTCGCTTCGTTATTGTAGTTGTAGGACCCTTGGCCGTTCGCGCCACAACAAAC ATTCAAGCCGGGTGCCAGTCCGAAGCTCTGGGGAAAACGGAGCATGTCCGTGACCTGGGT ATAAAAGTCGGCGTACATGAGCCTGACGCCGGCGTACTTGCTTTGGAGGCTGCAAATCCC CTG
Homology of Contig U35_45805 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g11620.2 | 350 | 6e-51 | protein|GDSL-like lipase/acylhydrolase, putative, expressed |
| Brachypodium v1_2 | Bradi2g06940.1 | 368 | 1e-51 | |
| Arabidopsis v10 | None |