barSeed - Barley Seed Development Database

Probe CUST_27592_PI390587928

Source Contig U35_19553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27592_PI390587928	Hv_44K_v2	GCAGAAACCTTCCATATATATATGCTCAGATAATACAACCATACAGTGGGTAAGATTAAC	1188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71749.1	3033	2e-24	1608 - 1667	100	60 / 60	minus	ABC02671 ABC12692
MLOC	MLOC_71748.1	4332	2e-24	1511 - 1570	100	60 / 60	minus	ABC12692
MLOC	MLOC_71749.2	2638	7e-23	2582 - 2638	100	57 / 57	plus	ABC12692
JLOC1	JLOC1_47702.1	1820	8e-25	1350 - 1409	100	60 / 60	plus
JLOC1	JLOC1_47701.1	1818	8e-25	1427 - 1486	100	60 / 60	minus
Harvest21	ABC12693	440	3e-25	355 - 414	100	60 / 60	plus
Harvest21	ABC12692	1228	1e-23	1172 - 1228	100	57 / 57	plus	ABC12692
Harvest35	U35_19553	1274	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1274 bp)

>U35_19553 1274 Hv_44K_v2
AACTCGATCGTGCTATAACATAGCACTCGAACGTGTAGAAAACATGTCGAGGCCTCTACT
TGTTGTAATGGCCGCGGCGGCGATCGTCGTCGTGGCCTGCTGTTTCGCGGCGTGTCCGGT
CGGCGCCGGCGCGAGCGCTGGTGGCTTCTACGAGAACTTCGAGGTGAAGTGGGGCACGGA
CCCGGACCCTGACCGGCGGGTGGAGATCGTCGACGGCGGGCGGCTGGTGACGCTCACCCT
CAACAACGTCTCCGGCTCCGGGTTCCAGTCCCGGGACGCCTTCCTCTTCGGCGAGTTCAC
CATGGAGATGAAGCTCGTGCCGGGCGACTCCGCCGGCACGGTCACCACCTTCTACTTGAC
ATCCAAGGACCCGACGGCGGTCGGGGACGGGCACGACGAGATCGACTTCGAGTTCCTGGG
CAACGTGAGCGGGGAGCCGTACCTGATGCAGACCAACGTGTTCGCGCAGGGGGTCGGGGG
CAGGGAGCAGCGATCCTACCTGTGGTTCGACCCGACAGAGGACTTCCACAACTACACCAT
CCTCTGGAACCCTCTAAACATCATCTTCTCGGTGGACGGCGTGCCGGTGCGCGTGTTCCG
GAACCAGGAGGCGAACGGCGTGCCGTACCTGACCAGGCGGGCGATGAAGGTGCACGCCAC
CATCTGGGACGGCGACACCTGGGCCACGCGCGGCGGCCGGGTCAAGATCGACTGGGCGCA
CGCGCCCTTCGTCGCCTCCTACGGGACCTACGCCTCCAGCGCCTGCGTCTCGGCGGCCGG
CGACGGCGACGGCGATGAGGACGTCCCGTCGGCCTTCTGCTGCCCGGGCGACGCCGCGTC
GTGGATGGCCCGGCGGCTGGGTCCCGACGGCGAGCGCGCGGTGGCGTGGGCGCGGGACAA
GTACATGGTGATGGACTACTGCGACGACCCCTGGAACCTGGGCCGCCCCGCCGAGTGCGA
CATGGACCGGCTCGCCTCGGCCGTCTGATTGTTTTGTTCCGTCGGCCATACCGCTTCCAC
ACACGTGTCGTCGTGTATTAGGCAGACAGACAGACGTGGGGTGTTTGTGTTCGTGCTTCT
AGTTCTAGCCTAGCCTAGCCTGCTAGGTCGTCTCACGTACTCAGATGTGACGTGTAGGCG
TAGCAATGGTAGTATATAGGTGTACGGATCATACCAAGGATGATTCCTGCAGAAACCTTC
CATATATATATGCTCAGATAATACAACCATACAGTGGGTAAGATTAACTCATTTGTGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_19553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51520.1	322	1e-117	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi5g20718.1	317	1e-163
Arabidopsis v10	AT5G57540.1	284	4e-94	\| Symbols: XTH13, AtXTH13 \| xyloglucan endotransglucosylase/hydrolase 13 \| chr5:23302996-23304049 REVERSE LENGTH=284