barSeed - Barley Seed Development Database

Probe CUST_27575_PI390587928

Source Contig U35_21872

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27575_PI390587928	Hv_44K_v2	ATTATAGGCCAGATGGAGGCTCTACATCCTTTTGCCTTGCTCCCCTTCTTGGTTTTTCTT	260	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63615.2	6054	2e-24	383 - 442	100	60 / 60	plus	ABC10767
MLOC	MLOC_63615.1	3950	2e-24	475 - 534	100	60 / 60	plus	ABC10767
JLOC1	JLOC1_41681.2	3929	8e-25	329 - 388	100	60 / 60	plus
JLOC1	JLOC1_41681.1	3281	8e-25	329 - 388	100	60 / 60	plus
Harvest21	ABC23956	547	3e-25	91 - 150	100	60 / 60	plus
Harvest35	U35_21872	718	3e-25	261 - 320	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_21872 718 Hv_44K_v2
GTCACACAGAGAACATATTCCCCTCCCCTCCACCTTCGGTGTGAAGCTCACGCCTCTCGC
CTCCATTTTCATGTGAAGCTTCTCAAGATTCTTGCATGCCTTTGCCGTTCCCTCTATCTA
CCCATCTACCTCTCTATCACAACATCCATCCATCCATCCGCCTCTCCAGGTCTCTATAAG
CTTGCTCAAACAGCAGGAATGGCATTGCCAATGGCAGCATGCTCTAGCTAGTTTGTCGCC
ACAATTCGCAAGCAGCAAGAATTATAGGCCAGATGGAGGCTCTACATCCTTTTGCCTTGC
TCCCCTTCTTGGTTTTTCTTCTGCTATCCATCGGTGGTGCCAGTGGCAATGGACATGGCG
AGGCGTTGCATGGAGATGCGCTGGCCTTGCTCTCCCTCAAGGCCTCCCTCAGCTGCCGCC
CCCACGTGTTGCGCTCGTGGTTGCCGGGCAATGTTGCCTCGGTGTGCGAGTGGACCGGCG
TCCGCTGCGCCGGTGGCAGGGTGGTCTCTGTCGACATCGCCAACATGAACGTGTCCACCG
GCGCGCCCGTCACGGCCGATGTGACTGGGCTCTCCGCGCTCGCCAACCTCTCCCTCGCCG
GGAACGGCATCGTGGGTGCGGTGGCCGTGTCCGCGCTCCCGGCGCTCCGCTACGTCAATG
TCTCCGGCAACCAGCTCCGCGGCGGCCTGGACAGCTGGGACTTCCCGTCACTCCCCGG

Homology of Contig U35_21872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None