barSeed - Barley Seed Development Database

Probe CUST_27570_PI390587928

Source Contig U35_21877

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27570_PI390587928	Hv_44K_v2	TTATCTCTGTTGAAAGTCGCAGCATGTTTACCGTATCCTATTACAAGCTACCATTTTGCA	1164	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7632.1	813	3e-22	1 - 59	98	59 / 60	minus	ABC15354
Harvest21	ABC15354	741	3e-25	1 - 60	100	60 / 60	minus	ABC15354
Harvest35	U35_21877	1224	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1224 bp)

>U35_21877 1224 Hv_44K_v2
AGGCTAAAGGTCGCTTTCCGGTGTCTACAAGGCTATTCCTAAGGGCCTTGCCTTCGGGGA
CTCTGATGTCACCGACCTCATTAGCGCTTGCGATAAGCTCAAGTGCCTTACCCTGAGATC
CTGCAGACTAGCTCATCAGCACTCCACACTCAGAATTGATACACCCTGTTCTGGACTCCA
GGAGCTCGAGTTCATCCACTTTGTGTGCGCGCGGATTGAGCTCATCCATGTCCCCAAGCT
CAGTAAAGTGCACTACCACTGGTGCTTAGACAACCCTCCAGTTTGCTTCGGCTATGTTCC
AGAGCTTTGTGAAGTCAGCCTCATTCGTCAGACCAAGGTGTTGCAGGCTCCATTCATGCT
GAGCGAGTGCTTGTCAAGGAGTGCAACGAACCTGTCAAAATTGCATCTTAATTTTGGCCA
CCAAATGATTTGGATTCAGCCCGAACATCCAAAGGGGCTTACTGCTATGTTCAAAAACCT
GACGGATGTGGTGCTTTCCAATATCTTCCCTGAATGTGATCTGAGCTGGACCCTATTTAT
CCTTGAAGCCGCACCTGCCCTACAGAAGTTTACAGTATTTATCTCGAAGTCGGCATGCAT
GTGCCATAGGGTATGAGGATAATGCCGAGAAGCCCAACGTGGTGTGGGAACCATCCAAGG
ATTTGAAGCACCTGAATTTGAAGTTGCTCTGGATGTACGGTTTCGAGGAGGAAGACAAAG
TGACAAACTACATAAGGCTAGTCATGGAGCGAGCTGTGGGGTTGAGGAGAATCGAGCTGC
GTGGTGAAAACTCATGCAAGGAATGCGATGTCATTGACCCGAGGAGATCCCAGGTGGATG
AAGATCGGAGGTGTCGGATCAAGGAGCGACTCACAGATGGATCCCCTTCATCCTTGGAGA
TAATAATGTGCTGACGGATATTCTCAAGGAATACTATGTCTCATCATGCTTCTAGCTGCT
TCTCAGCGCACCATCTCTGCTCATGACTGATGGCAACCACTTAGTTAGCTTAGTTCTGGA
GCTCAATTACCACTGCATGGCGTCATGTTTAGTACTCCCTCTGTCCCACGTTTTCTGACA
TTACACTAGTATGTGACGTGTTTTTTCTGTTTTACGTATGCATTAGCGTTCGTCCTGCTT
TAGATATCCTTTGTCACTTCTATGTTATCTCTGTTGAAAGTCGCAGCATGTTTACCGTAT
CCTATTACAAGCTACCATTTTGCA

Homology of Contig U35_21877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None