barSeed - Barley Seed Development Database

Probe CUST_27566_PI390587928

Source Contig U35_19560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27566_PI390587928	Hv_44K_v2	TGCAGATCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCG	233	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55350.1	1962	2e-24	825 - 884	100	60 / 60	minus	ABC13312 ABC41288
MLOC	MLOC_62020.1	1323	7e-23	931 - 990	98	59 / 60	plus	ABC13312
MLOC	MLOC_62020.2	1078	7e-23	801 - 860	98	59 / 60	plus	None
JLOC1	JLOC1_35690.1	1387	8e-25	396 - 455	100	60 / 60	minus
JLOC1	JLOC1_40567.1	1485	4e-23	963 - 1022	98	59 / 60	plus
Harvest21	ABC26601	312	3e-25	21 - 80	100	60 / 60	minus
Harvest21	ABC22789	437	1e-23	273 - 332	98	59 / 60	minus
Harvest35	U35_19560	313	3e-25	234 - 293	100	60 / 60	plus
Harvest35	U35_19559	668	1e-23	139 - 198	98	59 / 60	plus

Contig Sequence (313 bp)

>U35_19560 313 Hv_44K_v2
GGACGCCGCGTGCCTAGAGGGGTTGAGCCTCGCCTGCCACTACTACCCGGCGTGCCCGGA
GCCGCACCTGACGTTGGGCACCACCAAGCATTCCGACCCCAGCTTCCTCACCGTGCTCCT
CCAGGACGCCGTCGGCGGCCTCCAGGTGCTCGTCGATGACGAGAAGCAGCGGCCGGCGTG
GGTGGACGTGCCGGCAGTGACGGGGGCGCTGGTGGTGAACGTGGGCGACTACCTGCAGAT
CATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCCAAGAGCGCGGGGCC
GAGGGTGTCGGTG

Homology of Contig U35_19560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None