barSeed - Barley Seed Development Database

Probe CUST_27517_PI390587928

Source Contig U35_16464

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27517_PI390587928	Hv_44K_v2	GGCAGCTAGTCAAAATCCTTGTATATATATTGACCAGATTCATTCAATCCATATTCAGTG	332	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249899.1	1357	2e-24	1262 - 1321	100	60 / 60	plus	ABC05504
MLOC	MLOC_60061.1	918	2e-24	535 - 594	100	60 / 60	plus	ABC05504
JLOC1	JLOC1_39137.1	844	8e-25	534 - 593	100	60 / 60	plus
Harvest21	ABC51144	471	3e-25	371 - 430	100	60 / 60	plus
Harvest21	ABC05505	937	3e-25	851 - 910	100	60 / 60	plus
Harvest21	ABC05504	1423	3e-25	1339 - 1398	100	60 / 60	plus	ABC05504
Harvest35	U35_49433	471	3e-25	371 - 430	100	60 / 60	plus
Harvest35	U35_16464	416	3e-25	333 - 392	100	60 / 60	plus
Harvest35	U35_16462	1419	3e-25	1339 - 1398	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_16464 416 Hv_44K_v2
AGCCACCTGTACATACCAAGGCACAGCATGTGGCGGCTTCATTGGATTTGGGCCTACAGG
CCTTGTGAGGCGGATGACACATGGTTTGCTAGTTCACATGACAACACAGCACCACGGCGG
GACCTTGGACCCTGAGTCCGCCCATCACCCGCCTGCCGGAGATCTGCGTTGCCATGGGAA
CACTGTTTCATTTCATGGTCACCCCCCACATTGTTTGTTATGAATGAATCTGGGAAGCAC
AATGCCCATCCACAGGCAAGTTGCTTCGGATGTGTAGACAAGTAGTGTGTGCGCCGTTCG
TCAGCCTGCGATGCTGTTTACTAGATGGAACTGGCAGCTAGTCAAAATCCTTGTATATAT
ATTGACCAGATTCATTCAATCCATATTCAGTGATTCAATGACAAAAAAAAAAAAAA

Homology of Contig U35_16464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None